SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g44031): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g44031): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma10g44031

Feature Type:gene_model
Chromosome:Gm10
Start:50529234
stop:50530022
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g44031
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04880AT Annotation by Michelle Graham. TAIR10: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | chr1:1376106-1378264 REVERSE LENGTH=448 SoyBaseE_val: 5.00E-49ISS
GO:0006333GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0381 KOG HMG box-containing protein JGI ISS
PTHR13711Panther SWI/SNF-RELATED CHROMATIN BINDING PROTEIN JGI ISS
PTHR13711:SF39Panther HIGH MOBILITY GROUP PROTEIN HMG-2A,4 JGI ISS
PF00505PFAM HMG (high mobility group) box JGI ISS
UniRef100_G7IF34UniRef Annotation by Michelle Graham. Most informative UniRef hit: High mobility group protein B3 n=1 Tax=Medicago truncatula RepID=G7IF34_MEDTR SoyBaseE_val: 2.00E-66ISS
UniRef100_UPI000233D386UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D386 related cluster n=1 Tax=unknown RepID=UPI000233D386 SoyBaseE_val: 6.00E-150ISS

Expression Patterns of Glyma10g44031
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g44031 not represented in the dataset
Glyma10g44031 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g44031 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g294000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g44031
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g44031
>Glyma10g44031.1   sequence type=CDS   gene model=Glyma10g44031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACATCATCTTCAGCAGACTCTACAGTGATTGGAGTGATCGATCAGAAATTTGAAGGGGGCTATGTAGTTACCGTGACAATGGGTTCTGAGCAATTGAATGGTGTACTTTATTATGCTCAAGAGGACTCTGTATTATTGCCTGCACCATCCCATAACAACAACAATGCTGCTGCTGCTTCATTGCAGAAGAAGAAGAGACGCAGAAGCAAATCGGAAATAAAAAGGAGAAACCCTGCTCTTCCAAAACCCAAAAAAACTGGCTACAATTTCTTCTTTGCTGAAGAACATGCAAGATTAAAGCCATATCACCAAGGAAAGGAGACAGATATTGGGAGGATGATTGGTGAAAACTGGAGCAAGTTAACAGAGTCCGAAAAAATGGTGTATCAAGAGATGGCCAATAAGGATAAAGAGAGATACTTAAAAGAAATGGAAGAATATGTGGAGAAACTGAAGGCGGACCAAGTCATCGTTGATGCTGTGCCACTTCGACAATGGCCTCCTCAACAGGATACAGACATTCAAATGGAAGAAGCTGAGGCTGGAGAGGGAAGTTTTGATATGAATGCAATGTCTCTTATGGATTCAGAAGAGAGGTTTTCTTATTAG
Predicted protein sequences of Glyma10g44031
>Glyma10g44031.1   sequence type=predicted peptide   gene model=Glyma10g44031   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSSSADSTVIGVIDQKFEGGYVVTVTMGSEQLNGVLYYAQEDSVLLPAPSHNNNNAAAASLQKKKRRRSKSEIKRRNPALPKPKKTGYNFFFAEEHARLKPYHQGKETDIGRMIGENWSKLTESEKMVYQEMANKDKERYLKEMEEYVEKLKADQVIVDAVPLRQWPPQQDTDIQMEEAEAGEGSFDMNAMSLMDSEERFSY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo