Glyma10g43950 - SoyBase

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Report for Sequence Feature Glyma10g43950

Feature Type:	gene_model
Chromosome:	Gm10
Start:	50471877
stop:	50475129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g43950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G08790	AT	Annotation by Michelle Graham. TAIR10: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein \| chr4:5608489-5611118 REVERSE LENGTH=307	SoyBase	E_val: 4.00E-155	ISS
GO:0006807	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009749	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0000257	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nitrilase activity	SoyBase	N/A	ISS
GO:0016810	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	SoyBase	N/A	ISS
KOG0807	KOG	Carbon-nitrogen hydrolase	JGI		ISS
PTHR23088	Panther	NITRILASE-RELATED	JGI		ISS
PF00795	PFAM	Carbon-nitrogen hydrolase	JGI		ISS
UniRef100_G7IF23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nitrilase-like protein n=1 Tax=Medicago truncatula RepID=G7IF23_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LFG0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFG0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g43950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g43950 not represented in the dataset	Glyma10g43950 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g43950

Paralog	Evidence	Comments
Glyma20g38690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g43950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g292900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g43950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g43950

Limit To All Plant Sequences

>Glyma10g43950.2   sequence type=transcript   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATACATTTTCCATCCCTATAAAATTTGTCTGAAATCCTGAGTCAACACATGATGGTTGGTTGATGTAATGTGATGTTTTGTGTGTCAGTGGGTGTGAATTTTATTGGTGGATTCGCATTCGCCTCTGGAATTCCCAAATCATCAGTTTCAGCGACCATGGCTTCCAACTCCGTCCGAGTTGCCGCCGCTCAGATGACATCCATCAGCGACCTCGCTGCCAATTTGGCCACTTGCTCTCGTCTCATCAAAGAAGCAGCATCAGCTGGAGCCAAATTGCTTTGCTTTCCGGAGGCCTTTTCTTACGTGGGTACTAAGGATGGCGACAGTGTTCGTGTTGCTGAACCATTGGATGGACCAATTATGAGCCACTACTGCTCTTTGGCCAGAGAATCCAGCATTTGGTTGTCACTTGGAGGCTTCCAAGAAAAAGGATCCGATCCTCAACGCTTGTCTAATACTCATGTTATCGTAGATGACACCGGAAAAATTATAAGCTCTTATAGTAAGATACACCTGTTTGATGTAGATGTTCCGGGTGGAAGGGTATACAAAGAAAGTAGTTTTACAGAATCAGGCAAGGATATTGTTGCAGTAGACAGTCCTGTTGGGCGTTTGGGCCTCAGTGTTTGCTATGATTTGAGATTTCCAGAGATGTACCAATTGCTGCGTTTCCAACATGAAGCACAGGTACTACTGGTGCCTGCAGCATTCACAACAGTAACAGGTGAAGCACACTGGGAGATTCTTCTTCGTGCCCGTGCAATTGAGACTCAATGCTATGTCATTGCTGCTGCGCAAGCTGGCAAACATAATGATAAAAGAGAAAGCTACGGTGACACATTAATTATCGATCCATGGGGGACAATTGTAGGTCGATTACCAGATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGGGAGAAAATGCCAATTGCTAAGCAAAGGAAACCAATTGGCTTCTGGAAAGCTGCATCTCTATAGGTCTTAATTGGACCAGTCAAGAAGCGGTAGCTTATTTAAATATGGGATTTCTTTGTACCAAAAGAAAAATGAGACTTCCATATTAGATTCCCTTTAGGATGGTATCTATAATTATGAATTTCAGTCTTCATGGCAATAAGAACTGTCTTATCTTGTACTCATGTGTGCATGCTCCATGTTCTGTGTGCTGCAAGTTCCACAGAATCAAGTATTATTTTCTACAAGTTGAGGTTAGATTCATTGCATCCTAGTTTCCTTTTTGTGCATAGCCTATCGGTGTTTAATCTTGATGAAGGGAATTATTCTATACTAAATTTTTTACGCTTGGAAATTTGTCAAATTATAGGTTAATAAAAAATAAAAGGAGCAAAAATTAACTTAAC

>Glyma10g43950.3   sequence type=transcript   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATACATTTTCCATCCCTATAAAATTTGTCTGAAATCCTGAGTCAACACATGATGGTTGGTTGATGTAATGTGATGTTTTGTGTGTCAGTGGGTGTGAATTTTATTGGTGGATTCGCATTCGCCTCTGGAATTCCCAAATCATCAGTTTCAGCGACCATGGCTTCCAACTCCGTCCGAGTTGCCGCCGCTCAGATGACATCCATCAGCGACCTCGCTGCCAATTTGGCCACTTGCTCTCGTCTCATCAAAGTATTCTTCTTTTCAATCTTTTCTTTTCTGGGTATGTCTTATGTTCTTCTCTTCTAGTATTCTGTTTTGTACTGTTTATCAAAGGAAGCAGCATCAGCTGGAGCCAAATTGCTTTGCTTTCCGGAGGCCTTTTCTTACGTGGGTACTAAGGATGGCGACAGTGTTCGTGTTGCTGAACCATTGGATGGACCAATTATGAGCCACTACTGCTCTTTGGCCAGAGAATCCAGCATTTGGTTGTCACTTGGAGGCTTCCAAGAAAAAGGATCCGATCCTCAACGCTTGTCTAATACTCATGTTATCGTAGATGACACCGGAAAAATTATAAGCTCTTATAGTAAGATACACCTGTTTGATGTAGATGTTCCGGGTGGAAGGGTATACAAAGAAAGTAGTTTTACAGAATCAGGCAAGGATATTGTTGCAGTAGACAGTCCTGTTGGGCGTTTGGGCCTCAGTGTTTGCTATGATTTGAGATTTCCAGAGATGTACCAATTGCTGCGTTTCCAACATGAAGCACAGGTACTACTGGTGCCTGCAGCATTCACAACAGTAACAGGTGAAGCACACTGGGAGATTCTTCTTCGTGCCCGTGCAATTGAGACTCAATGCTATGTCATTGCTGCTGCGCAAGCTGGCAAACATAATGATAAAAGAGAAAGCTACGGTGACACATTAATTATCGATCCATGGGGGACAATTGTAGGTCGATTACCAGATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGGGAGAAAATGCCAATTGCTAAGCAAAGGAAACCAATTGGCTTCTGGAAAGCTGCATCTCTATAGGTCTTAATTGGACCAGTCAAGAAGCGGTAGCTTATTTAAATATGGGATTTCTTTGTACCAAAAGAAAAATGAGACTTCCATATTAGATTCCCTTTAGGATGGTATCTATAATTATGAATTTCAGTCTTCATGGCAATAAGAACTGTCTTATCTTGTACTCATGTGTGCATGCTCCATGTTCTGTGTGCTGCAAGTTCCACAGAATCAAGTATTATTTTCTACAAGTTGAGGTTAGATTCATTGCATCCTAGTTTCCTTTTTGTGCATAGCCTATCGGTGTTTAATCTTGATGAAGGGAATTATTCTATACTAAATTTTTTACGCTTGGAAATTTGTCAAATTATAGGTTAATAAAAAATAAAAGGAGCAAAAATTAACTTAAC

>Glyma10g43950.4   sequence type=transcript   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATACATTTTCCATCCCTATAAAATTTGTCTGAAATCCTGAGTCAACACATGATGGTTGGTTGATGTAATGTGATGTTTTGTGTGTCAGTGGGTGTGAATTTTATTGGTGGATTCGCATTCGCCTCTGGAATTCCCAAATCATCAGTTTCAGCGACCATGGCTTCCAACTCCGTCCGAGTTGCCGCCGCTCAGATGACATCCATCAGCGACCTCGCTGCCAATTTGGCCACTTGCTCTCGTCTCATCAAAGAAGCAGCATCAGCTGGAGCCAAATTGCTTTGCTTTCCGGAGGCCTTTTCTTACGTGGGTACTAAGGATGGCGACAGTGTTCGTGTTGCTGAACCATTGGATGGACCAATTATGAGCCACTACTGCTCTTTGGCCAGGTTCTAATCATTTCATCATTTTCTTCTGATTTTGTTCTCTCCTCTCGCATAAACAATATTTATTTTGCATTTTTACATGCTCTATTGCACTACTGCAGAGAATCCAGCATTTGGTTGTCACTTGGAGGCTTCCAAGAAAAAGGATCCGATCCTCAACGCTTGTCTAATACTCATGTTATCGTAGATGACACCGGAAAAATTATAAGCTCTTATAGTAAGATACACCTGTAAGTAAGATCACTAACTTATAATCCTAACAATTATTAATATTGTAGTAAATGATTGTTTATCAAATCCTTTTGGTATGGTCCTCCTGAATTGAGATTTTACTGCTTTTTTGTTTGTTTGTTGTGTTATTATGGATGTATAAACAATTGATATTTTATTCATTTTATATTATTTCAAGGTTTGATGTAGATGTTCCGGGTGGAAGGGTATACAAAGAAAGTAGTTTTACAGAATCAGGCAAGGATATTGTTGCAGTAGACAGTCCTGTTGGGCGTTTGGGCCTCAGTGTTTGCTATGATTTGAGATTTCCAGAGATGTACCAATTGCTGCGTTTCCAACATGAAGCACAGGTACTACTGGTGCCTGCAGCATTCACAACAGTAACAGGTGAAGCACACTGGGAGATTCTTCTTCGTGCCCGTGCAATTGAGACTCAATGCTATGTCATTGCTGCTGCGCAAGCTGGCAAACATAATGATAAAAGAGAAAGCTACGGTGACACATTAATTATCGATCCATGGGGGACAATTGTAGGTCGATTACCAGATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGGGAGAAAATGCCAATTGCTAAGCAAAGGAAACCAATTGGCTTCTGGAAAGCTGCATCTCTATAGGTCTTAATTGGACCAGTCAAGAAGCGGTAGCTTATTTAAATATGGGATTTCTTTGTACCAAAAGAAAAATGAGACTTCCATATTAGATTCCCTTTAGGATGGTATCTATAATTATGAATTTCAGTCTTCATGGCAATAAGAACTGTCTTATCTTGTACTCATGTGTGCATGCTCCATGTTCTGTGTGCTGCAAGTTCCACAGAATCAAGTATTATTTTCTACAAGTTGAGGTTAGATTCATTGCATCCTAGTTTCCTTTTTGTGCATAGCCTATCGGTGTTTAATCTTGATGAAGGGAATTATTCTATACTAAATTTTTTACGCTTGGAAATTTGTCAAATTATAGGTTAATAAAAAATAAAAGGAGCAAAAATTAACTTAAC

Coding sequences of Glyma10g43950

Limit To All Plant Sequences

>Glyma10g43950.1   sequence type=CDS   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGTGTGTCAGTGGGTGTGAATTTTATTGGTGGATTCGCATTCGCCTCTGGAATTCCCAAATCATCAGTTTCAGCGACCATGGCTTCCAACTCCGTCCGAGTTGCCGCCGCTCAGATGACATCCATCAGCGACCTCGCTGCCAATTTGGCCACTTGCTCTCGTCTCATCAAATATTCTGTTTTGTACTGTTTATCAAAGGAAGCAGCATCAGCTGGAGCCAAATTGCTTTGCTTTCCGGAGGCCTTTTCTTACGTGGGTACTAAGGATGGCGACAGTGTTCGTGTTGCTGAACCATTGGATGGACCAATTATGAGCCACTACTGCTCTTTGGCCAGAGAATCCAGCATTTGGTTGTCACTTGGAGGCTTCCAAGAAAAAGGATCCGATCCTCAACGCTTGTCTAATACTCATGTTATCGTAGATGACACCGGAAAAATTATAAGCTCTTATAGTAAGATACACCTGTTTGATGTAGATGTTCCGGGTGGAAGGGTATACAAAGAAAGTAGTTTTACAGAATCAGGCAAGGATATTGTTGCAGTAGACAGTCCTGTTGGGCGTTTGGGCCTCAGTGTTTGCTATGATTTGAGATTTCCAGAGATGTACCAATTGCTGCGTTTCCAACATGAAGCACAGGTACTACTGGTGCCTGCAGCATTCACAACAGTAACAGGTGAAGCACACTGGGAGATTCTTCTTCGTGCCCGTGCAATTGAGACTCAATGCTATGTCATTGCTGCTGCGCAAGCTGGCAAACATAATGATAAAAGAGAAAGCTACGGTGACACATTAATTATCGATCCATGGGGGACAATTGTAGGTCGATTACCAGATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGGGAGAAAATGCCAATTGCTAAGCAAAGGAAACCAATTGGCTTCTGGAAAGCTGCATCTCTATAG

>Glyma10g43950.2   sequence type=CDS   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTGTGTGTCAGTGGGTGTGAATTTTATTGGTGGATTCGCATTCGCCTCTGGAATTCCCAAATCATCAGTTTCAGCGACCATGGCTTCCAACTCCGTCCGAGTTGCCGCCGCTCAGATGACATCCATCAGCGACCTCGCTGCCAATTTGGCCACTTGCTCTCGTCTCATCAAAGAAGCAGCATCAGCTGGAGCCAAATTGCTTTGCTTTCCGGAGGCCTTTTCTTACGTGGGTACTAAGGATGGCGACAGTGTTCGTGTTGCTGAACCATTGGATGGACCAATTATGAGCCACTACTGCTCTTTGGCCAGAGAATCCAGCATTTGGTTGTCACTTGGAGGCTTCCAAGAAAAAGGATCCGATCCTCAACGCTTGTCTAATACTCATGTTATCGTAGATGACACCGGAAAAATTATAAGCTCTTATAGTAAGATACACCTGTTTGATGTAGATGTTCCGGGTGGAAGGGTATACAAAGAAAGTAGTTTTACAGAATCAGGCAAGGATATTGTTGCAGTAGACAGTCCTGTTGGGCGTTTGGGCCTCAGTGTTTGCTATGATTTGAGATTTCCAGAGATGTACCAATTGCTGCGTTTCCAACATGAAGCACAGGTACTACTGGTGCCTGCAGCATTCACAACAGTAACAGGTGAAGCACACTGGGAGATTCTTCTTCGTGCCCGTGCAATTGAGACTCAATGCTATGTCATTGCTGCTGCGCAAGCTGGCAAACATAATGATAAAAGAGAAAGCTACGGTGACACATTAATTATCGATCCATGGGGGACAATTGTAGGTCGATTACCAGATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGGGAGAAAATGCCAATTGCTAAGCAAAGGAAACCAATTGGCTTCTGGAAAGCTGCATCTCTATAG

>Glyma10g43950.3   sequence type=CDS   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCACTACTGCTCTTTGGCCAGAGAATCCAGCATTTGGTTGTCACTTGGAGGCTTCCAAGAAAAAGGATCCGATCCTCAACGCTTGTCTAATACTCATGTTATCGTAGATGACACCGGAAAAATTATAAGCTCTTATAGTAAGATACACCTGTTTGATGTAGATGTTCCGGGTGGAAGGGTATACAAAGAAAGTAGTTTTACAGAATCAGGCAAGGATATTGTTGCAGTAGACAGTCCTGTTGGGCGTTTGGGCCTCAGTGTTTGCTATGATTTGAGATTTCCAGAGATGTACCAATTGCTGCGTTTCCAACATGAAGCACAGGTACTACTGGTGCCTGCAGCATTCACAACAGTAACAGGTGAAGCACACTGGGAGATTCTTCTTCGTGCCCGTGCAATTGAGACTCAATGCTATGTCATTGCTGCTGCGCAAGCTGGCAAACATAATGATAAAAGAGAAAGCTACGGTGACACATTAATTATCGATCCATGGGGGACAATTGTAGGTCGATTACCAGATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGGGAGAAAATGCCAATTGCTAAGCAAAGGAAACCAATTGGCTTCTGGAAAGCTGCATCTCTATAG

>Glyma10g43950.4   sequence type=CDS   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATAAACAATTGATATTTTATTCATTTTATATTATTTCAAGGTTTGATGTAGATGTTCCGGGTGGAAGGGTATACAAAGAAAGTAGTTTTACAGAATCAGGCAAGGATATTGTTGCAGTAGACAGTCCTGTTGGGCGTTTGGGCCTCAGTGTTTGCTATGATTTGAGATTTCCAGAGATGTACCAATTGCTGCGTTTCCAACATGAAGCACAGGTACTACTGGTGCCTGCAGCATTCACAACAGTAACAGGTGAAGCACACTGGGAGATTCTTCTTCGTGCCCGTGCAATTGAGACTCAATGCTATGTCATTGCTGCTGCGCAAGCTGGCAAACATAATGATAAAAGAGAAAGCTACGGTGACACATTAATTATCGATCCATGGGGGACAATTGTAGGTCGATTACCAGATCGTTTGTCTACAGGCATTGTAGTAGCTGATATTGATTTATCATTTGTTGATTCAGTTAGGGAGAAAATGCCAATTGCTAAGCAAAGGAAACCAATTGGCTTCTGGAAAGCTGCATCTCTATAG

Predicted protein sequences of Glyma10g43950

Limit To All Plant Sequences

>Glyma10g43950.1   sequence type=predicted peptide   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCVSVGVNFIGGFAFASGIPKSSVSATMASNSVRVAAAQMTSISDLAANLATCSRLIKYSVLYCLSKEAASAGAKLLCFPEAFSYVGTKDGDSVRVAEPLDGPIMSHYCSLARESSIWLSLGGFQEKGSDPQRLSNTHVIVDDTGKIISSYSKIHLFDVDVPGGRVYKESSFTESGKDIVAVDSPVGRLGLSVCYDLRFPEMYQLLRFQHEAQVLLVPAAFTTVTGEAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDTLIIDPWGTIVGRLPDRLSTGIVVADIDLSFVDSVREKMPIAKQRKPIGFWKAASL*

>Glyma10g43950.2   sequence type=predicted peptide   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFCVSVGVNFIGGFAFASGIPKSSVSATMASNSVRVAAAQMTSISDLAANLATCSRLIKEAASAGAKLLCFPEAFSYVGTKDGDSVRVAEPLDGPIMSHYCSLARESSIWLSLGGFQEKGSDPQRLSNTHVIVDDTGKIISSYSKIHLFDVDVPGGRVYKESSFTESGKDIVAVDSPVGRLGLSVCYDLRFPEMYQLLRFQHEAQVLLVPAAFTTVTGEAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDTLIIDPWGTIVGRLPDRLSTGIVVADIDLSFVDSVREKMPIAKQRKPIGFWKAASL*

>Glyma10g43950.3   sequence type=predicted peptide   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHYCSLARESSIWLSLGGFQEKGSDPQRLSNTHVIVDDTGKIISSYSKIHLFDVDVPGGRVYKESSFTESGKDIVAVDSPVGRLGLSVCYDLRFPEMYQLLRFQHEAQVLLVPAAFTTVTGEAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDTLIIDPWGTIVGRLPDRLSTGIVVADIDLSFVDSVREKMPIAKQRKPIGFWKAASL*

>Glyma10g43950.4   sequence type=predicted peptide   gene model=Glyma10g43950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYKQLIFYSFYIISRFDVDVPGGRVYKESSFTESGKDIVAVDSPVGRLGLSVCYDLRFPEMYQLLRFQHEAQVLLVPAAFTTVTGEAHWEILLRARAIETQCYVIAAAQAGKHNDKRESYGDTLIIDPWGTIVGRLPDRLSTGIVVADIDLSFVDSVREKMPIAKQRKPIGFWKAASL*

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