SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G04680 | AT | Annotation by Michelle Graham. TAIR10: CLP-similar protein 3 | chr3:1270053-1272415 REVERSE LENGTH=444 | SoyBase | E_val: 0 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006397 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA processing | SoyBase | N/A | ISS |
| GO:0006777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Mo-molybdopterin cofactor biosynthetic process | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009908 | GO-bp | Annotation by Michelle Graham. GO Biological Process: flower development | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phyllome development | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005849 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mRNA cleavage factor complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG2749 | KOG | mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 | JGI | ISS | |
| PTHR12755 | Panther | CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P | JGI | ISS | |
| PF03205 | PFAM | Molybdopterin guanine dinucleotide synthesis protein B | JGI | ISS | |
| PF06807 | PFAM | Pre-mRNA cleavage complex II protein Clp1 | JGI | ISS | |
| UniRef100_G7IF21 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Macrophage erythroblast attacher n=1 Tax=Medicago truncatula RepID=G7IF21_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFF7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFF7_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g43930 not represented in the dataset |
Glyma10g43930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g38670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g43930.1 sequence type=CDS gene model=Glyma10g43930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGTATGGTGGTTCGGGTTCGGCATCGACAATTAAGCAAGTCAAATTGGAGAGAGAAAGCGAACTGAGAATAGAAGTTGGTAACGACGCACCTCTTCGCCTTCGACTCCTTAACGGCACTGCTGAGATTTTTGGCACCGAGCTTCCACCCGAAATCTGGCTCAATTTCCCTCCCAGACTCAAGTTTGCTGTGTTTACTTGGTATGGTGCAACCATTGAAATGGATGGCGCTACTGAAACTGATTATACTGCAGATGAGACTCCAATGGTCAGTTATGTAAATGTACATGCTGTGCTGGATGGAAGAAGAAGTCGTGCTAAAGCTTCATCACCAGATGATTCTGTTTCTTCTCAGGGCCCTAGGGTCATTGTTGTAGGACCTACTGATTCTGGAAAGAGTACCTTGTCAAGGATGCTTCTTAGTTGGGCAGCTAAACAAGGTTGGAAACCTACCTTTGTTGACCTGGATATTGGCCAAGGCTCTATAACAATTCCTGGATGCATTGCCGCCACTCCAATAGAAATGCCCATTGATCCCGTGGAAGGAATTCCACTTGAAATGCCTCTTGTTTACTTTTACGGGCATGCAACTCCAAGTAACAATGTAGAATTGTATAAAGTGCTTGTTAAGGAGCTTGCAGGGATGATTGAGAGGCAATTTACTGGAAATGCTGAATCTCGAGCTTCAGGGATGGTGATAAATACTATGGGATGGATAGAGGGAGTAGGCTATGATTTGCTCTTGCATGCAATTCGTACATTCAAGGCCAATGTTGTCTTGGTTTTGGGTCAGGAAAAACTGTGCAGTATGCTCAAAGATGTGCTCAAGAGTGAGCCCAAAGTAGACGTTGTTAAACTTCAGAGGTCAGGTGGAGTTGTATCTAGGAATGCAAAAGTCCGTCAGAAGGCCAGAAGTTATAGGATAAGGGAATACTTCTATGGCCTTTCAAATGATCTATCTCCACATTCTAATATTGCAAATTTTAGTGATTTGTTTGTTTATCGAGTTGGTGGTGGGCCACAGGCCCCTCGCTCAGCCTTGCCCATTGGAGCAGAACCTGCTGCAGATCCAACAAGAGTTGTACCTGTAAATATAAATCGTGATTTGCTCCATTTAGTCCTTGCTGTCTCATTTGCCAAGGAACCTGATGAGATCATTTCCAGCAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATATTTGATAATGGGATCCTTAACATGGCTTGAAACATGA
>Glyma10g43930.1 sequence type=predicted peptide gene model=Glyma10g43930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAYGGSGSASTIKQVKLERESELRIEVGNDAPLRLRLLNGTAEIFGTELPPEIWLNFPPRLKFAVFTWYGATIEMDGATETDYTADETPMVSYVNVHAVLDGRRSRAKASSPDDSVSSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDPVEGIPLEMPLVYFYGHATPSNNVELYKVLVKELAGMIERQFTGNAESRASGMVINTMGWIEGVGYDLLLHAIRTFKANVVLVLGQEKLCSMLKDVLKSEPKVDVVKLQRSGGVVSRNAKVRQKARSYRIREYFYGLSNDLSPHSNIANFSDLFVYRVGGGPQAPRSALPIGAEPAADPTRVVPVNINRDLLHLVLAVSFAKEPDEIISSNVAGFIYVTDIDIQRKKITYLAPSAGELPSKYLIMGSLTWLET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
