SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55080 | AT | Annotation by Michelle Graham. TAIR10: SET domain-containing protein | chr3:20411476-20415830 REVERSE LENGTH=463 | SoyBase | E_val: 2.00E-160 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1338 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR13271 | Panther | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE | JGI | ISS | |
| PTHR13271:SF7 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00856 | PFAM | SET domain | JGI | ISS | |
| UniRef100_G7IF12 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase n=1 Tax=Medicago truncatula RepID=G7IF12_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D382 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D382 related cluster n=1 Tax=unknown RepID=UPI000233D382 | SoyBase | E_val: 0 | ISS |
|
Glyma10g43900 not represented in the dataset |
Glyma10g43900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g292500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g43900.2 sequence type=transcript gene model=Glyma10g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATTCCGAGTTCGCACTGCAACTGCAAGTCGCTGGTGGTCTCTGCACACCGTTTTCAACACTCATTGTCTTTGCCGCAACTTGTATTATTCGGCTTTGTCCAAACGTCAGTTTTCTGGCAATTGCGACGATTTTTTGCAGTGGTTGGAGCGGAAAGCTGCCTGTAGTATTTCCTCCTCACTTTTTATTGGCAATTCTTCGTATGGAAGGTCTCTGTTTGCCTCTAAGATAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCTTCCTGAAATCAGATCTTTGATTGGTGAGGAAGTTGGAAATATTGCAAAACTTGCTACTGTTATTCTGATCGAGAAGAAACTGGGTCAGGGCTCTGAGTGGTATCCTTATATCAGCTGTCTTCCACAACAAGGAGAGCTGCATAATACGGTATTTTGGACTGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCAGGAAACTATTGACCAAAAATCTCAAATTGAAAAGGACTTTTTGGCAATCAAGCATATTTTTGAATGTTCCCATCAAAGTTTTGGAGATTCTACCTACAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCACGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCGGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATATTCCTAAGCATGATCCTCTGCGGGACATGAAGTTGGAACTCTTGCATCAGTACTTTATACCTCCACCTGAAGATATGAAGGGCTTGTCACATCCCGTGAATTCCTTCAGCATCAAGTTTGTACTGATTCCTAATTTGCTATTTGTCTTGCAGAATCATTTAGATAATATAGTCCAATTTTTCTATATTGATTCTTTGTATTGAGGTCTTTTGACCAACATAATAGAATGATTTTGCTTTGTGGGTCCAAATTACCCTTATTGCTCATGAACGCAGTGCTTTGTGGGGCACATACAATATCCCACC >Glyma10g43900.3 sequence type=transcript gene model=Glyma10g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTCGGGTTGAATGGCCTAGTGAAACTAAAAGACACGTATTAACTCAGTTTCCCAATTCTCAAATCCCGAGTTGAAGCGGTGAACCAACATTGGAGAAAGATACTCACGTGACTCAAGTTTTTAACTTATTTTTTTACCGTTAAATTTGAATTAAATGAATGGTTAAGATTGTGATTAACTCTTTAAAATTACTATCTCTATATAGAATAATACTTTTATAACTCATTTAAAGTTAAAGGATCCACCATTCCCTTATGGATATCTGGGATAACGGATTTGCAGCAGAGGCAGCCGACTAAGTTATGCAGTGAGTAAACGACGTCGTATCCACACCCGAGGTTCTGCAATGCCATTCCGAGTTCGCACTGCAACTGCAAGTCGCTGGTGGTCTCTGCACACCGTTTTCAACACTCATTGTCTTTGCCGCAACTTGTATTATTCGGCTTTGTCCAAACGTCAGTTTTCTGGCAATTGCGACGATTTTTTGCAGTGGTTGGAGCGGAAAGCTGCCTGTAGTATTTCCTCCTCACTTTTTATTGGCAATTCTTCGTATGGAAGGTCTCTGTTTGCCTCTAAGATAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCTTCCTGAAATCAGATCTTTGATTGGTGAGGAAGTTGGAAATATTGCAAAACTTGCTACTGTTATTCTGATCGAGAAGAAACTGGGTCAGGGCTCTGAGTGGTATCCTTATATCAGCTGTCTTCCACAACAAGGAGAGCTGCATAATACGGTATTTTGGACTGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCAGGAAACTATTGACCAAAAATCTCAAATTGAAAAGGACTTTTTGGCAATCAAGCATATTTTTGAATGTTCCCATCAAAGTTTTGGAGATTCTACCTACAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCACGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCGGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATATTCCTAAGCATGATCCTCTGCGGGACATGAAGTTGGAACTCTTGCATCAGTACTTTATACCTCCACCTGAAGATATGAAGGGCTTGTCACATCCCGTGAATTCCTTCAGCATCAAGACTTCCTGATATGGTGTTACTCTCAAATCTTGCTTATATACTGTCAGTATTTGGCTATCTGACGGAGGCTGTGATCACATAGGGAGGTGAAGTCTGATAGTGGAAAAGGGAAGGGTCTTCCACAATCACTTCGTGCGCTTGCTCGTGTTCTTTCTTGTACAACATCTCAGGAAATTGACAATTTGATTGCGGAAGCTGCTCAAACTGATGGTAGGCTGGCTAGGCGCCCTTTACAGGATATCAGCAAAGAGATACAAGCACACATGATGTTGTTGTCACTATTCATCCAATTAATTGAGGAGCGCAGTGTGGCTATTATGTCACTGGATTCTCTCTCCTTGTGTGGAAGATTTTCTGTTAGAAAACTAATGGCTCAAGATCTCCTACAAGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTAGAGAACTACTGTTTTTCCATGACTTGATGGTCAGTAACTGGCTGCAGCCACAGGATTATCAAAGAGGTTAAGCTTCCAACAGATGTAGGTTGGGATTAACATGAACTATCAAAATATTGACAATAATGCATGCAAAATTTTAGATAAATCAAACATTTGTAACTATGTTATCTTATAGTTGACATTTACTAAATAGCATAGTTTCTGTCAACGTCTCCTTAGGCCTTGACCAATGACTCCGCTGGCTATCGCTGCTGCGCACTGTCTTTCCAAGAACAAGTTTCTGGTCTTTGCCTATCCTATCTGATTTAATTACGTGGACAATGTTGGAAACATTGATGTGAGTGAATATGAAAATGGAAAATGGAAGAAGTTTTTAATTTCCTAAGAATCCTTCGTTTCTCACGTTTAGTATTTGTTCCGGTAAAGGTTTAGGGGGTGCCTGTACCCAGAGCATAAAAGTGTAAAAGTGTGTTCTGCCCTTCCTCTTGGCTCATGGTAGATTATAAACTTTTCTAACTGGGTAGGATTTAATCATATCTTATCTCTTATATTATAAGATC
>Glyma10g43900.1 sequence type=CDS gene model=Glyma10g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATTCCGAGTTCGCACTGCAACTGCAAGTCGCTGGTGGTCTCTGCACACCGTTTTCAACACTCATTGTCTTTGCCGCAACTTGTATTATTCGGCTTTGTCCAAACGTCAGTGGTTGGAGCGGAAAGCTGCCTGTAGTATTTCCTCCTCACTTTTTATTGGCAATTCTTCGTATGGAAGGTCTCTGTTTGCCTCTAAGATAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCTTCCTGAAATCAGATCTTTGATTGGTGAGGAAGTTGGAAATATTGCAAAACTTGCTACTGTTATTCTGATCGAGAAGAAACTGGGTCAGGGCTCTGAGTGGTATCCTTATATCAGCTGTCTTCCACAACAAGGAGAGCTGCATAATACGGTATTTTGGACTGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCAGGAAACTATTGACCAAAAATCTCAAATTGAAAAGGACTTTTTGGCAATCAAGCATATTTTTGAATGTTCCCATCAAAGTTTTGGAGATTCTACCTACAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCACGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCGGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATATTCCTAAGCATGATCCTCTGCGGGACATGAAGTTGGAACTCTTGCATCAGTACTTTATACCTCCACCTGAAGATATGAAGGGCTTGTCACATCCCGTGAATTCCTTCAGCATCAAGGAGGTGAAGTCTGATAGTGGAAAAGGGAAGGGTCTTCCACAATCACTTCGTGCGCTTGCTCGTGTTCTTTCTTGTACAACATCTCAGGAAATTGACAATTTGATTGCGGAAGCTGCTCAAACTGATGGTAGGCTGGCTAGGCGCCCTTTACAGGATATCAGCAAAGAGATACAAGCACACATGATGTTGTTGTCACTATTCATCCAATTAATTGAGGAGCGCAGTGTGGCTATTATGTCACTGGATTCTCTCTCCTTGTGTGGAAGATTTTCTGTTAGAAAACTAATGGCTCAAGATCTCCTACAAGGTGAGCTTCGCATTCTCAAATCTGCTTCTGCCTGGCTAGAGAACTACTGTTTTTCCATGACTTGA >Glyma10g43900.2 sequence type=CDS gene model=Glyma10g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATTCCGAGTTCGCACTGCAACTGCAAGTCGCTGGTGGTCTCTGCACACCGTTTTCAACACTCATTGTCTTTGCCGCAACTTGTATTATTCGGCTTTGTCCAAACGTCAGTTTTCTGGCAATTGCGACGATTTTTTGCAGTGGTTGGAGCGGAAAGCTGCCTGTAGTATTTCCTCCTCACTTTTTATTGGCAATTCTTCGTATGGAAGGTCTCTGTTTGCCTCTAAGATAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCTTCCTGAAATCAGATCTTTGATTGGTGAGGAAGTTGGAAATATTGCAAAACTTGCTACTGTTATTCTGATCGAGAAGAAACTGGGTCAGGGCTCTGAGTGGTATCCTTATATCAGCTGTCTTCCACAACAAGGAGAGCTGCATAATACGGTATTTTGGACTGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCAGGAAACTATTGACCAAAAATCTCAAATTGAAAAGGACTTTTTGGCAATCAAGCATATTTTTGAATGTTCCCATCAAAGTTTTGGAGATTCTACCTACAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCACGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCGGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATATTCCTAAGCATGATCCTCTGCGGGACATGAAGTTGGAACTCTTGCATCAGTACTTTATACCTCCACCTGAAGATATGAAGGGCTTGTCACATCCCGTGAATTCCTTCAGCATCAAGTTTGTACTGATTCCTAATTTGCTATTTGTCTTGCAGAATCATTTAGATAATATAGTCCAATTTTTCTATATTGATTCTTTGTATTGA >Glyma10g43900.3 sequence type=CDS gene model=Glyma10g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCATTCCGAGTTCGCACTGCAACTGCAAGTCGCTGGTGGTCTCTGCACACCGTTTTCAACACTCATTGTCTTTGCCGCAACTTGTATTATTCGGCTTTGTCCAAACGTCAGTTTTCTGGCAATTGCGACGATTTTTTGCAGTGGTTGGAGCGGAAAGCTGCCTGTAGTATTTCCTCCTCACTTTTTATTGGCAATTCTTCGTATGGAAGGTCTCTGTTTGCCTCTAAGATAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCTTCCTGAAATCAGATCTTTGATTGGTGAGGAAGTTGGAAATATTGCAAAACTTGCTACTGTTATTCTGATCGAGAAGAAACTGGGTCAGGGCTCTGAGTGGTATCCTTATATCAGCTGTCTTCCACAACAAGGAGAGCTGCATAATACGGTATTTTGGACTGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCAGGAAACTATTGACCAAAAATCTCAAATTGAAAAGGACTTTTTGGCAATCAAGCATATTTTTGAATGTTCCCATCAAAGTTTTGGAGATTCTACCTACAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCACGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCGGGTGAACAGGTACTAATAAGATATGGAAAGTTTTCAAATGCTACATTAATGCTGGACTTTGGTTTTACAATTCCATACAACATTTACGATCAGGTTCAGATCCAGTTTGATATTCCTAAGCATGATCCTCTGCGGGACATGAAGTTGGAACTCTTGCATCAGTACTTTATACCTCCACCTGAAGATATGAAGGGCTTGTCACATCCCGTGAATTCCTTCAGCATCAAGACTTCCTGA
>Glyma10g43900.1 sequence type=predicted peptide gene model=Glyma10g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPFRVRTATASRWWSLHTVFNTHCLCRNLYYSALSKRQWLERKAACSISSSLFIGNSSYGRSLFASKIIQTGDCILKVPYRVQITADNLLPEIRSLIGEEVGNIAKLATVILIEKKLGQGSEWYPYISCLPQQGELHNTVFWTESELEMIRPSSVYQETIDQKSQIEKDFLAIKHIFECSHQSFGDSTYKDFMHACTLVGSRAWGSTNGLALIPFADFLNHDGVSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLRDMKLELLHQYFIPPPEDMKGLSHPVNSFSIKEVKSDSGKGKGLPQSLRALARVLSCTTSQEIDNLIAEAAQTDGRLARRPLQDISKEIQAHMMLLSLFIQLIEERSVAIMSLDSLSLCGRFSVRKLMAQDLLQGELRILKSASAWLENYCFSMT* >Glyma10g43900.2 sequence type=predicted peptide gene model=Glyma10g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPFRVRTATASRWWSLHTVFNTHCLCRNLYYSALSKRQFSGNCDDFLQWLERKAACSISSSLFIGNSSYGRSLFASKIIQTGDCILKVPYRVQITADNLLPEIRSLIGEEVGNIAKLATVILIEKKLGQGSEWYPYISCLPQQGELHNTVFWTESELEMIRPSSVYQETIDQKSQIEKDFLAIKHIFECSHQSFGDSTYKDFMHACTLVGSRAWGSTNGLALIPFADFLNHDGVSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLRDMKLELLHQYFIPPPEDMKGLSHPVNSFSIKFVLIPNLLFVLQNHLDNIVQFFYIDSLY* >Glyma10g43900.3 sequence type=predicted peptide gene model=Glyma10g43900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPFRVRTATASRWWSLHTVFNTHCLCRNLYYSALSKRQFSGNCDDFLQWLERKAACSISSSLFIGNSSYGRSLFASKIIQTGDCILKVPYRVQITADNLLPEIRSLIGEEVGNIAKLATVILIEKKLGQGSEWYPYISCLPQQGELHNTVFWTESELEMIRPSSVYQETIDQKSQIEKDFLAIKHIFECSHQSFGDSTYKDFMHACTLVGSRAWGSTNGLALIPFADFLNHDGVSEAIVMSDDDKQCSEIIADRDYAPGEQVLIRYGKFSNATLMLDFGFTIPYNIYDQVQIQFDIPKHDPLRDMKLELLHQYFIPPPEDMKGLSHPVNSFSIKTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
