SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04530 | AT | Annotation by Michelle Graham. TAIR10: 3-ketoacyl-CoA synthase 19 | chr5:1292222-1293616 REVERSE LENGTH=464 | SoyBase | E_val: 0 | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008610 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009416 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to light stimulus | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| GO:0016747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups other than amino-acyl groups | SoyBase | N/A | ISS |
| PF08392 | PFAM | FAE1/Type III polyketide synthase-like protein | JGI | ISS | |
| PF08541 | PFAM | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal | JGI | ISS | |
| UniRef100_I1LFE3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-ketoacyl-CoA synthase n=1 Tax=Glycine max RepID=I1LFE3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D693 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D693 related cluster n=1 Tax=unknown RepID=UPI000233D693 | SoyBase | E_val: 0 | ISS |
|
Glyma10g43800 not represented in the dataset |
Glyma10g43800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g291700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g43800.1 sequence type=CDS gene model=Glyma10g43800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCTTTTGTTCTTATGCCTCCTTCCCTTCTTATTTTACTCTTTCTTTACCCTCTACAAGTTGATTCTTGAACGTAGAGGCCAACCATGCTACATGTTGGCCTACGAGTGCTTCATGCCCCCGGAAGACACGAAACTCGACACGGACTCCGCAGCAAAAATCGTGCTACGAAACAAAAAACTGAGGTTGGAGGAGTTAAGGTTTCTCCTGAAAACCATCGTGAGTTCTGGTATTGGAGAGAACACTTACTGCCCCAGAACCGTTCTCGAAGGGAGAGAAGAGTGTCCAACTCTCAAGGACACGTACGAGGAGATAGACGAGATCATGTTCGACACACTCGACAACCTCTTCAAGAAGACAGGAATTTCACCCTCCGAGATAGACTTCCTTGTGGTGAACGTGTCCTTGTTCTCCCCAGCACCTTCTCTCACAGCACGCATCATAAACAGGTACAAGATGAGGGAAAACATCAAGGCCTTCAACCTTGCCGGAATGGGGTGCAGTGCAAGTGTTGTTGCTATCGATGTGGTGCAACAGCTTTTCAAGACTTACAAGAACTCCGTTGGGATTGTTGTGAGCACCGAGGATCTCGGTGCGCATTGGTACTGTGGAAGGGACAAGAAGATGATGCTCTCTAACTGTCTCTTTCGCTCTGGTGGCTGCTCCATGATGTTTACAAACAAGGCTTCTCTCAAGAGCCGTGCGATATTGAAGCTCAAGCACATGGAGAGGACTCAGTATGGTGCTGATGACGAGGCTTACAACTGCTGCATACAGGTGGAGGATGAGTTAGGGTATTCAGGTTTTCGACTCACCAAGAGTCTTGTGAAGAGTGCTGCTCAAGCCTTGACGGTGAATCTTCAAACTATGGCGCCCAAGATTCTGCCACTGTGGGAAATGGTGAGGTTCTTTTTTGCATCTATAAGGTATAGTGGGATGAAGAAGAGGGAGCTGCTACCCTTTCTCACTGGGATGGTTCTTGGAAAGGGTAATAAGAAGAAGACAAAGTTTAATGTGTTGGGAGGGGGTTTGAATTTCAAGGCTGGGATAGAGCACTTTTGTGTGCACCCTGGTGGGAGGGCAGTTATTGATGGGGTTGGTAAGGGTTTAAGGCTGAATGAATATGACCTTGAGCCTGCAAGGATGGCACTTCACCGTTGGGGTAACACTTCTGCTGGTGGCCTTTGGTATGTTTTGGGGTACATGGAGGCCAAGAAGAGGCTCAAGAAGGGTGATAGGATCCTCATGATTAGTCTTGGAGCCGGCTTCAAGTGCAACAACTGTGTTTGGGAGGTGATGAGGGACTTGTCTGATACTAATGTGTGGAAGGACTGCATAGAAAGTTACCCTCCAAACACACTAAACAACCCTTTTAAGGAAAAGTATGACTGGATCAATGATGAATATCTTAGCTTTGTGAGGTTGGATTTTAGCAGGATGGTCCTTTAA
>Glyma10g43800.1 sequence type=predicted peptide gene model=Glyma10g43800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLLFLCLLPFLFYSFFTLYKLILERRGQPCYMLAYECFMPPEDTKLDTDSAAKIVLRNKKLRLEELRFLLKTIVSSGIGENTYCPRTVLEGREECPTLKDTYEEIDEIMFDTLDNLFKKTGISPSEIDFLVVNVSLFSPAPSLTARIINRYKMRENIKAFNLAGMGCSASVVAIDVVQQLFKTYKNSVGIVVSTEDLGAHWYCGRDKKMMLSNCLFRSGGCSMMFTNKASLKSRAILKLKHMERTQYGADDEAYNCCIQVEDELGYSGFRLTKSLVKSAAQALTVNLQTMAPKILPLWEMVRFFFASIRYSGMKKRELLPFLTGMVLGKGNKKKTKFNVLGGGLNFKAGIEHFCVHPGGRAVIDGVGKGLRLNEYDLEPARMALHRWGNTSAGGLWYVLGYMEAKKRLKKGDRILMISLGAGFKCNNCVWEVMRDLSDTNVWKDCIESYPPNTLNNPFKEKYDWINDEYLSFVRLDFSRMVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
