SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G55340 | AT | Annotation by Michelle Graham. TAIR10: phragmoplastin interacting protein 1 | chr3:20515672-20517832 FORWARD LENGTH=597 | SoyBase | E_val: 5.00E-85 | ISS |
| GO:0009920 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell plate formation involved in plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0019898 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003729 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mRNA binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0131 | KOG | Splicing factor 3b, subunit 4 | JGI | ISS | |
| PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24011:SF58 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_B9T163 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein gar2, putative n=1 Tax=Ricinus communis RepID=B9T163_RICCO | SoyBase | E_val: 1.00E-116 | ISS |
| UniRef100_I1LFC9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LFC9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g43660 not represented in the dataset |
Glyma10g43660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g23130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g290400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g43660.1 sequence type=CDS gene model=Glyma10g43660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTCTATCAAACAAGAAACTGAAGCTTAAGCTGAGAGCTGAATTAGCCCAAAGCAACTCCAACGCCGCCGCTGAACCCCCTTCATTTTCTATTAATAATAATAACTCTCTCAAAACTCTTCTGGACTCTGCCACGCCCACACCCAGATTCTTCAAGAGAGAGAAGCGAAGAAAGCTTCGATCCGACCAACCTCCACAACAACCCAACAAGGAAAATGAAACTGAAACACAGGGTTCGCCCAATAAGAAGACAAAGAGGAAGAAGCTAGAGGACGATGACGTGGCAGCAACTGGAGTTTCCGACACACCAAAGAAGAAGAAAAACCCCAGGACGGCTAAGGAAAACGAATCTAATGGTGGAGGGGAAATGCCAGAGGCTACAGAGTTAACCAAGACCAATACAACTACCAGTCAAGACAATGGTGATGCTCCTAATACAAATACAAAGATTTATGTTGGAGGAATTCCCTATTATTCAACTGAGGATGATATTCGAAGTTATTTTGAAAGCTGTGGCACCATAACTGAAGTTGATTGCATGACTTTTCCTGAAACTGGCAAGTTTAGAGGGATTGCCATTATTACTTTCAAGACTGAAGCAGCAGCCAAAAGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAGCAACTCGAGCCAATAAAGCCTCAGATTTTGCTCCAGAAATTTTGGAGGGGTACAATAGAATATATGTTGGAAATTTGTCGTGGGATATAACAGAGGAAGAACTGAGGAAATTCTTCAATAATTCTGAGATAACATCGCTACGATTCGGTATGGACAAGGAGACAGGAGAGTTTCGAGGGTATGCCCATGTGGATTTTGGTGATAGTCAGTCACTAAAAAAAGCACTTGCATTGGACCAAAATGTTTTGTTTGGGAGACCTGTCAGGATAAGTTGTGCGGTTCCTTTGAAGAAAAAAACTGGAACTCATGCAAGCTCCACAGTTAATGAAGCTAATGGTGATAAATCAAGTTCCACAGGAAGTGACAAGATAAATGGAGCTGATGGTGATAAATCAAGTTCCACAGGAAGTGGCAAGATGAGGAGGAGGACATGCTATGAGTGTGGTGAGAAAGGACATACATTTGCGGCATGCCCAACGAAACAAACAGTTGCTGCAACTACAACCTAA
>Glyma10g43660.1 sequence type=predicted peptide gene model=Glyma10g43660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVLSNKKLKLKLRAELAQSNSNAAAEPPSFSINNNNSLKTLLDSATPTPRFFKREKRRKLRSDQPPQQPNKENETETQGSPNKKTKRKKLEDDDVAATGVSDTPKKKKNPRTAKENESNGGGEMPEATELTKTNTTTSQDNGDAPNTNTKIYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEAAAKRALALDGADMGGLFLKIQPYKATRANKASDFAPEILEGYNRIYVGNLSWDITEEELRKFFNNSEITSLRFGMDKETGEFRGYAHVDFGDSQSLKKALALDQNVLFGRPVRISCAVPLKKKTGTHASSTVNEANGDKSSSTGSDKINGADGDKSSSTGSGKMRRRTCYECGEKGHTFAACPTKQTVAATTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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