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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G13680 | AT | Annotation by Michelle Graham. TAIR10: IKI3 family protein | chr5:4410522-4415471 REVERSE LENGTH=1319 | SoyBase | E_val: 0 | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0006400 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA modification | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009787 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010928 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of auxin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0031538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of anthocyanin metabolic process | SoyBase | N/A | ISS |
| GO:0032784 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0035265 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ growth | SoyBase | N/A | ISS |
| GO:0048530 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fruit morphogenesis | SoyBase | N/A | ISS |
| GO:0071215 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0080178 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 5-carbamoylmethyluridine metabolic process | SoyBase | N/A | ISS |
| GO:2000024 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of leaf development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0033588 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Elongator holoenzyme complex | SoyBase | N/A | ISS |
| KOG1920 | KOG | IkappaB kinase complex, IKAP component | JGI | ISS | |
| PTHR12747 | Panther | IKAPPAB KINASE COMPLEX-ASSOCIATED PROTEIN | JGI | ISS | |
| PF04762 | PFAM | IKI3 family | JGI | ISS | |
| UniRef100_D7M5V4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aba-overly sensitive 1 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M5V4_ARALL | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LFC4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LFC4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g43570 not represented in the dataset |
Glyma10g43570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g289800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g43570.1 sequence type=CDS gene model=Glyma10g43570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAACTTGAAGGTGTTTGGGGAGGTTCCCTTGGGACTCTCCCTTGACTCTAACGAGGAAACTATAGGGTTTTGCAGCTTCGACATCGAACGCAACCGCATCTTCTTCCTCTCTTCCCACAATCTCATTTACACTTCCCATCTCTCCTCTTTCCACGAGAACGCCGTTTGGAGCCCTAACGCCTCGCTCTCCTCCTCCGATGCTGTTACCGTCGATCTCGAACCCGGAGACGCCGTTACCTCCTTCGACTACCTCATGGAGAAAGAAGCGCTTCTTCTCGGAACCTCCAACGGCCTTCTCTTGCTCCACAACGTCGACGACGCCTCCGACGCGACGCAAGTCGTTGGCAAGCTCGACGGCGGCGTCAATGCAGTTTCCCTCAGCCCTGACGGAGAACTCGTCGCCGTAACCACCGGTTTCGGGCAGCTTTTGGTGATGACTCACGATTGGGACGTGTTGTACGAAACATCACTCCACGATGATGATGTTCCCGTAAGTGAAGGGGAGTTTCTTCCCGTGTCTTGGCGAGGAGATGGGAAATACTTTGCTACGATGAGTGATGCGTGTGGTTCTGGTTCGTTGCTTAAGAAAATTAAGGTTTGGGATCGAGATTCAGGGGATTTGCTTGCTTCTTCGGAGCTGAGAAGTTTTGCTGGGGCAGTTTTGGAGTGGATGCCCAGTGGTGCTAAAATTGCAGCTGTTTGTGATGGGAAAGATGGAAATGAATCTCCCTCTGTTGTTTTCTTTGAGAGGAATGGATTAGAGAGAAGCAGGTTTAGTGTCGATTCGAAAGTTAAACTTCTCAAGTGGAATTGCAGTTCTGATCTTCTCGCAGGTGTTGTTGAATGTGAAAATTATGATGCTGTAAGGATATGGTGTTTTAGTAATAACCACTGGTACCTGAAGCATGAAATTAGATACTTGAAGCGAGATGAAGTTAGCTTCATTTGGAATCCGACGAAGCAGCTGCAGTTAATTTGTTGGACTGTTGGTGGTCAGGTCACAGTTTCTAACTTTATTTGGATCACGGCTGTTATGGAGAATTCTGTTGCACTGGTTGTCGATGGCTCCAATATTCATGTAACGCCACTGTCCTTGTCCTTAATGCCACCTCCTATGTATTTATTTAGCTTGAAATTTTCTTCTCATGTCCGGGGTATGGCAGTGTATTGCAAACACTCTAAGAACCAGTTAGCTGCGTTTCTTTCAAATGGTAGCTTATGTGTTGTGGAGCTTCCATCAATTGAAACCTGGGAAGAACTAGAGGGGAAAGAATTCAGTGTTGAAGACTCTCATACAGAAATGGCATTTGGATCCATTTTACATCTTGAATGGTTGGATTCCCATAAGCTATTAGCCATTTCACATTATGGTTTTAGTCATAGTAATGACTTATTTCAAACCTCATTGACTGAGGGTGGACTTCGAGGCTTCTATTTGCAGGAAGTGGAACTTGAATGTTCTGAGGATCTTGTTCCAGGATTGCTGACATGCTCAGGCTGGCATGCAGCAGTTTCAAATCGAAATACCCTTGAAGAGCTGGTTATTGGCATCGCTTCCAATCCTGCTAGTAAACACTCTGCATATATTCAGTTTTCTAGGGGGGAAATCCAAGAGTATGTATCAAAAATTGGGATTAGTAGAGGATCTCTAGAACAAGAACATCAAGGTTTTTCTGCAGCTTGCCCTTGGATGAGTGTAGCGTTAGTTGGCAGTGCTGGCCTATCAAAATCAGTGCTTTTTGGACTGGATGAGATTGGCAGACTGCATGCTAATGCGGGGATACTTTGCAACAACTGCAGCAGCTTCTCATTTTACTCAAATTTGGCTGACCAAGTGATCACACATCTAATCCTTGCAACTAAACAAGATTTGCTTTTTATTGTTGACATTGCAGATGTATTTAATGGGGAGTTAGACTCAAAGTACAGTAACTTTGTCCGCATTAACAGTAGAAAAAAAGAAGAAAATGAAAGCTTCATAAATATATGGGAGAGAGGTGCTAAAATTGTTGGAGTTTTACATGGAGATGAAGCTGCCATTATACTGCAAACTACTCGGGGAAACCTAGAATGTATATGCCCTAGAAAGTTGGTTTTGGTTTCCATCATTAATGCATTAGTTCAAAAGCGCTTTAAAGATGCATTACTTATGGTTAGAAGGCATAGGATAAATTTCAATGTAATTGTTGATTACTGTGGCTGGCAAGCATTTTCACAATTAGCTTCTGAATTTGTCAGGCAGGTTAACAATCTGGGTTACATAACCGAGTTTGTTTGTTCCATAAAGAATGAAAATATTATAGAGAAACTCTATAAAAATCACATTTCTGTTCCCTGTCCAAAGGTTGCTGATGTTATGCTAGTTGGGGGCATCCAGAATTCTCTTGCTGGTAACAAGGTTTCTTCCGTTTTGATGGCTGTAAGAAAAGCACTTGAGGATCACATAACAGAAAGTCCTGCAAGGGAGCTTTGCATTTTGACCACTCTAGCTCAGAGTGATCCTCCATTACTTGAAGATGCTTTAAAGAGAATAAAAGTTATTCGTGAAAAGGAATTGTCTCATGCTGATGACCAGGGGAGAATGTCTTACCCTTCTGCTGAAGAAGCTTTGAAGCATCTTTTGTGGTTAGCTGACTCTGATGCTGTATATGAAGCTGCTTTGGGTCTTTATGATTTAAATCTTGCAGCTATTGTGGCATTGAATGCTCAGAAAGATCCAAAAGAGTTTCTTCCTTTCTTACAGGAATTGGAGCGTATGCCAACTCTATTAATGCAATATAATATTGACCTTAGGCTGAAAAGGTTTGAAAAGGCTCTCAGACACATTGCTTCTGCTGGAGATTCTTATTATGATGATTGTATGACACTCGTTAAAAAAAACCCTCTACTTTTTCCTTTGGCTCTTCAACTTTTTACTGGCCCTACCAAGCAGAAGCCATTCCTTGAGGCATGGGGGGATTATCTTAGTGATGAAAAATGCTTTGAAGATGCTGCGGCAATTTATATGTCCTGTTTCAATCTGGATAAGGCTCTGAAGTCTTATCGTGCTATTAATAACTGGAGTGGGGTGCTTACGGTTGCTGGGTTCCTTAATTTGGGAAAGGATGAGCTACTACATCTTGCCAGTGAGCTCTGTGAAGAACTTCAAGCACTAGGTAAACCTGGGGAGGCTGCCAAAATTGCCCTGGAGTACTGTGGAGATGTTAACACCGGTGTGAATTTGTTGATTACTGCAAGGGACTGGGAGGAGGCTTTGAGGGTTGTTTTTATGCATAGAAGAGAGGACTTAATTAAAACAGTGAAGAGTGCATCTTTGGAATGTGCAAGCACACTTACCAGTGAATATGAGGAAGGCTTAGAGAAAGTGGGGAAATACTTGGCACGTTACCTGGCTGTTCGACAGAGAAGATTACTTCTTGCAGCAAAGCTCCAGTCAGAGGAACGTGCAGCAAGTGATCTTGATGATGATGCTGCTTCAGAAACTAGCAGTAATTTTAGTGGAATGAGTGCATACACCACAGGGACCAAGAAAAGTTCTGCTGCTTCAATGAGCTCAACTGCGACTAGCAAGGCAAGAGAAACTAGGCGTCTGAAGAAGAGAGGAAAAATCCGTCCTGGGAGTCCTGATGAGGAGATTGCCTTGGTGGAGCATTTGAAAGGCATGTCCCTGACAGTGGAAGCTAAACGTGAGCTGAAATCTTTGTTGGTCTCCCTTATGATGTTTGGTGAGGGAGAAACATGTAAGAAGCTACAACAAACGGGGGAAAACTTTCAATTGTCTCAGATGGCAGCAGTCAAATTAGCTGAAGATACAATATCTAATGATACCATAAATGAGTATGCACATACGTTGGAGCAATATACCCAAAAAGTAAGGAATGAAATTCACAATTCAGAGGCTTTCTCGTGGCGGCTTAAAGTTTTTTTGTCCTATGAGTGA
>Glyma10g43570.1 sequence type=predicted peptide gene model=Glyma10g43570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKNLKVFGEVPLGLSLDSNEETIGFCSFDIERNRIFFLSSHNLIYTSHLSSFHENAVWSPNASLSSSDAVTVDLEPGDAVTSFDYLMEKEALLLGTSNGLLLLHNVDDASDATQVVGKLDGGVNAVSLSPDGELVAVTTGFGQLLVMTHDWDVLYETSLHDDDVPVSEGEFLPVSWRGDGKYFATMSDACGSGSLLKKIKVWDRDSGDLLASSELRSFAGAVLEWMPSGAKIAAVCDGKDGNESPSVVFFERNGLERSRFSVDSKVKLLKWNCSSDLLAGVVECENYDAVRIWCFSNNHWYLKHEIRYLKRDEVSFIWNPTKQLQLICWTVGGQVTVSNFIWITAVMENSVALVVDGSNIHVTPLSLSLMPPPMYLFSLKFSSHVRGMAVYCKHSKNQLAAFLSNGSLCVVELPSIETWEELEGKEFSVEDSHTEMAFGSILHLEWLDSHKLLAISHYGFSHSNDLFQTSLTEGGLRGFYLQEVELECSEDLVPGLLTCSGWHAAVSNRNTLEELVIGIASNPASKHSAYIQFSRGEIQEYVSKIGISRGSLEQEHQGFSAACPWMSVALVGSAGLSKSVLFGLDEIGRLHANAGILCNNCSSFSFYSNLADQVITHLILATKQDLLFIVDIADVFNGELDSKYSNFVRINSRKKEENESFINIWERGAKIVGVLHGDEAAIILQTTRGNLECICPRKLVLVSIINALVQKRFKDALLMVRRHRINFNVIVDYCGWQAFSQLASEFVRQVNNLGYITEFVCSIKNENIIEKLYKNHISVPCPKVADVMLVGGIQNSLAGNKVSSVLMAVRKALEDHITESPARELCILTTLAQSDPPLLEDALKRIKVIREKELSHADDQGRMSYPSAEEALKHLLWLADSDAVYEAALGLYDLNLAAIVALNAQKDPKEFLPFLQELERMPTLLMQYNIDLRLKRFEKALRHIASAGDSYYDDCMTLVKKNPLLFPLALQLFTGPTKQKPFLEAWGDYLSDEKCFEDAAAIYMSCFNLDKALKSYRAINNWSGVLTVAGFLNLGKDELLHLASELCEELQALGKPGEAAKIALEYCGDVNTGVNLLITARDWEEALRVVFMHRREDLIKTVKSASLECASTLTSEYEEGLEKVGKYLARYLAVRQRRLLLAAKLQSEERAASDLDDDAASETSSNFSGMSAYTTGTKKSSAASMSSTATSKARETRRLKKRGKIRPGSPDEEIALVEHLKGMSLTVEAKRELKSLLVSLMMFGEGETCKKLQQTGENFQLSQMAAVKLAEDTISNDTINEYAHTLEQYTQKVRNEIHNSEAFSWRLKVFLSYE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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