SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23300 | AT | Annotation by Michelle Graham. TAIR10: pyrimidine d | chr5:7847792-7850243 REVERSE LENGTH=460 | SoyBase | E_val: 0 | ISS |
| GO:0006164 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0006207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 'de novo' pyrimidine nucleobase biosynthetic process | SoyBase | N/A | ISS |
| GO:0006222 | GO-bp | Annotation by Michelle Graham. GO Biological Process: UMP biosynthetic process | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0042991 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004152 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dihydroorotate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0004158 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dihydroorotate oxidase activity | SoyBase | N/A | ISS |
| KOG1436 | KOG | Dihydroorotate dehydrogenase | JGI | ISS | |
| PTHR11938 | Panther | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE | JGI | ISS | |
| PTHR11938:SF7 | Panther | GLUTAMATE SYNTHASE | JGI | ISS | |
| PF01180 | PFAM | Dihydroorotate dehydrogenase | JGI | ISS | |
| UniRef100_G7IEA3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dihydroorotate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7IEA3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LF90 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LF90_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g43220 not represented in the dataset |
Glyma10g43220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g23670 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g286200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g43220.1 sequence type=CDS gene model=Glyma10g43220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGCATGGTCTTCTAGAAAGTTACTGAGAGACGTTCTTCTCAAAAGGGTAGTCTCGAATCAACTTCCCGGCGTCAGATGTTTTTCTTCTGCGCCAAAAAGTGCTCCTAAGATCGGTCACTATTCCAAGAAAGGAAGGTTGTTGACAGGAGCCACCATAGGTCTACTTATAGCTGGTGGAGCTTATGTGAGTACTGTGGATGAAGCTACTTTCTGTGGATGGTTATTCTCGGCAACAAAACTTGTGAATCCCTTTTTTGCTTTGTTGGACCCTGAGTTTGCACACAACTTGGGTGTCTCGGCTGCAGCTCGTGGTTGGGTTCCAAGGGAGAAGAGGCCCGACCCATCAATCTTAGGGCTAGAAGTTTGGGGAAGAAAATTCTCCAACCCAGTAGGCCTTGCTGCAGGCTTTGATAAAAATGCTGAGGCTGTAGATGGTTTACTTGCTTTGGGCTTTGGCTTTGTGGAGGTAGGCTCTGTTACTCCTGTCCCCCAGGATGGCAATCCAAAACCTCGTATCTTCAGGTTGCGAAAAGAAGGTGCTGTAATAAATAGATGTGGCTTTAATAGTGAGGGAATTGTTGCTGTTGCAAAGCGACTAGGTGCTCAGCATGGCAAGAGGAAACTTGATGAAACTTCAAGCGCTTCACCTTCTTCCAATAATGAGGTCAAACATGGTGGAAAAGCTGGCCCTGGCATTCTTGGTGTCAATCTTGGAAAGAACAAGACAAGTGAAGATGCTGCAGCAGATTATGTTCAAGGAGTTCATACATTGTCCCAATATGCTGATTACCTGGTGATTAATGTTTCATCACCCAATACCCCTGGTTTGCGCATGCTTCAAGGAAGAAAGCAATTGAAGGATCTAGTGAAGAAGGTTCAAGCTGCTCGTGATGAAATGCAATGGGGTGAGGAGGGCCCACCTCCATTGCTGGTAAAAATAGCTCCAGATTTGTCAAAAGAAGACCTTGAAGATATTGCTGCAGTCGCCTTGGCTCTTCACTTGGATGGACTGATTATATCGAACACAACCATTTCAAGACCAGATCCTACCAGTAAAAATCCATTGGCTTCAGAAACTGGTGGCTTGAGTGGGAAGCCTCTCTTCAATCTCTCCACCAACATCTTGAAGGAGATGTATATCTTGACAAGGGGCAGGATTCCTTTGATTGGCTGTGGGGGCATTAGCAGTGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAGGCTGAATTAGCTGCATGCCTGGAAAGAGATGGTTTCAAATCCATTGTTGATGCAGTTGGTGCAGATTGTAGATGA
>Glyma10g43220.1 sequence type=predicted peptide gene model=Glyma10g43220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAWSSRKLLRDVLLKRVVSNQLPGVRCFSSAPKSAPKIGHYSKKGRLLTGATIGLLIAGGAYVSTVDEATFCGWLFSATKLVNPFFALLDPEFAHNLGVSAAARGWVPREKRPDPSILGLEVWGRKFSNPVGLAAGFDKNAEAVDGLLALGFGFVEVGSVTPVPQDGNPKPRIFRLRKEGAVINRCGFNSEGIVAVAKRLGAQHGKRKLDETSSASPSSNNEVKHGGKAGPGILGVNLGKNKTSEDAAADYVQGVHTLSQYADYLVINVSSPNTPGLRMLQGRKQLKDLVKKVQAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALHLDGLIISNTTISRPDPTSKNPLASETGGLSGKPLFNLSTNILKEMYILTRGRIPLIGCGGISSGEDAYKKIRAGATLVQLYTAFAYGGPALIPQIKAELAACLERDGFKSIVDAVGADCR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
