SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08320 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: E2F-associated phosphoprotein, C-terminal (InterPro:IPR019370); Has 149 Blast hits to 149 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). | chr5:2677153-2678603 FORWARD LENGTH=150 | SoyBase | E_val: 2.00E-66 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR15967 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF10238 | PFAM | E2F-associated phosphoprotein | JGI | ISS | |
| UniRef100_G7IE91 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E2F-associated phosphoprotein n=1 Tax=Medicago truncatula RepID=G7IE91_MEDTR | SoyBase | E_val: 2.00E-72 | ISS |
| UniRef100_UPI0001B638E2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B638E2 related cluster n=1 Tax=unknown RepID=UPI0001B638E2 | SoyBase | E_val: 1.00E-114 | ISS |
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Glyma10g43180 not represented in the dataset |
Glyma10g43180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g285700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g43180.2 sequence type=transcript gene model=Glyma10g43180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCTTTAAAGGTCCTACGATCTTCGGTAGAAGAACAAATACTACTACCTGTACGGGTTCAGTTCTCTTTCTTTTGAAAAATCGTAAGAGAAAGAGAAGAGATGGAAGAAGATGGCAAGAGAGACAACACTGATTCACCCACCAATTCGCAACAAACAGTTTCTGATGATGATGAAATAGACTACACAACCAAACCAGAGTTTTATGACCCAGATCTTGATGATAACGATGAAAAGTGGATTGATAAAAAAAGGCATGGACATGACTCTGATGCTGTGCTTAGCTGCCCTGCTTGCTTCACCACCCTCTGCCTAGAATGCCAAAGGCATGAAAAATATTTGACCCAGTATAGGGCAGTATTTGTGGTAAACTGCAAAATTGGGAATGACAAGGTTTTGAAACAAAATACTTCAAGATCAAGAAAAAGAAATAGAGGGAAAGAAGGATTTGATGGAGATGATGCACATTCAACTAATATTGAAACATTCAAGCAAGTTTGCTGTTCCGTTTGCTCGACAGAGCAGTGTATAAACTATGTTGGTCTCTGAATTTCACTACCGTGCAAAATTCCAACTCAGGACTAGTTGATCTTAGTTTCTCTATGTTTTAGAGATCCATGAAGACACATTTCCTCCACTTCTAATATTTCTCCCCCGTGAGTATATTTTAGAGGTAACCGTCGCTGGAAGAAGAAACTGTCTGTGGGGCTAAAACCGTGGACATAGAGGTATTGCTTAAAAGAACAAAATTAACATCTTTGGATATCCTGTTTGACATGAGCTTCCTCTTGTATGCTTTTCAATGCCTTGTTAAATTATGTTTATTATTGCTACGTTTGTTTTTCATTTTCATTGTTACGGAGATCCGAATTATGCAAAAGCATGGAATACTGTTCCATGAGCTTATAATATACAACTTATATAATTAGCTCCATATCAAGCAGCATTTAATAAAATTAATGTATCTAAATGTTTTCAAAAGTCATGAACATTTCACTCGCTGGTATTATTTCTTAGGTGAAATCAATGCGTGTGTTTTCGTGATGTTTTTTCCCTGTAACAGTGAGG
>Glyma10g43180.1 sequence type=CDS gene model=Glyma10g43180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAGATGGCAAGAGAGACAACACTGATTCACCCACCAATTCGCAACAAACAGTTTCTGATGATGATGAAATAGACTACACAACCAAACCAGAGTTTTATGACCCAGATCTTGATGATAACGATGAAAAGTGGATTGATAAAAAAAGGCATGGACATGACTCTGATGCTGTGCTTAGCTGCCCTGCTTGCTTCACCACCCTCTGCCTAGAATGCCAAAGGCATGAAAAATATTTGACCCAGTATAGGGCAGTATTTGTGGTAAACTGCAAAATTGGGAATGACAAGGTTTTGAAACAAAATACTTCAAGATCAAGAAAAAGAAATAGAGGGAAAGAAGGATTTGATGGAGATGATGCACATTCAACTAATATTGAAACATTCAAGCAAGTTTGCTGTTCCGTTTGCTCGACAGAGGTTGGTGTCATTGACCAAGACGAGATTTATCATTTCTTCAATGTTCTCCCGAGTGAATCCTAA >Glyma10g43180.2 sequence type=CDS gene model=Glyma10g43180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAAGATGGCAAGAGAGACAACACTGATTCACCCACCAATTCGCAACAAACAGTTTCTGATGATGATGAAATAGACTACACAACCAAACCAGAGTTTTATGACCCAGATCTTGATGATAACGATGAAAAGTGGATTGATAAAAAAAGGCATGGACATGACTCTGATGCTGTGCTTAGCTGCCCTGCTTGCTTCACCACCCTCTGCCTAGAATGCCAAAGGCATGAAAAATATTTGACCCAGTATAGGGCAGTATTTGTGGTAAACTGCAAAATTGGGAATGACAAGGTTTTGAAACAAAATACTTCAAGATCAAGAAAAAGAAATAGAGGGAAAGAAGGATTTGATGGAGATGATGCACATTCAACTAATATTGAAACATTCAAGCAAGTTTGCTGTTCCGTTTGCTCGACAGAGCAGTGTATAAACTATGTTGGTCTCTGA
>Glyma10g43180.1 sequence type=predicted peptide gene model=Glyma10g43180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEDGKRDNTDSPTNSQQTVSDDDEIDYTTKPEFYDPDLDDNDEKWIDKKRHGHDSDAVLSCPACFTTLCLECQRHEKYLTQYRAVFVVNCKIGNDKVLKQNTSRSRKRNRGKEGFDGDDAHSTNIETFKQVCCSVCSTEVGVIDQDEIYHFFNVLPSES* >Glyma10g43180.2 sequence type=predicted peptide gene model=Glyma10g43180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEDGKRDNTDSPTNSQQTVSDDDEIDYTTKPEFYDPDLDDNDEKWIDKKRHGHDSDAVLSCPACFTTLCLECQRHEKYLTQYRAVFVVNCKIGNDKVLKQNTSRSRKRNRGKEGFDGDDAHSTNIETFKQVCCSVCSTEQCINYVGL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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