SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19910 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr3:6926497-6929324 FORWARD LENGTH=340 | SoyBase | E_val: 2.00E-99 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1493 | KOG | Anaphase-promoting complex (APC), subunit 11 | JGI | ISS | |
| PTHR14155 | Panther | RING FINGER PROTEIN 6/12/38 | JGI | ISS | |
| PTHR14155:SF11 | Panther | OS03G0173900 PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G7IE80 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RING finger protein n=1 Tax=Medicago truncatula RepID=G7IE80_MEDTR | SoyBase | E_val: 1.00E-148 | ISS |
| UniRef100_I1LF79 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LF79_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g43120 not represented in the dataset |
Glyma10g43120 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g23790 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g284900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g43120.2 sequence type=transcript gene model=Glyma10g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTCCTCGATTTTGCTCTTTCTCTCCAACGTCACCACACCCTTCCCTATTTCTTTCTTTATTTATTTTACAATAACATATAATAATAATTGTTACACTATGATATATAATATAATCATATTTACATATATATTCTCTTGGATTGATTCGATCCTCTAATCTATCTCCGCTATTCCTCATTCTCCTTCTTAAAATTCATCTTCAATTCAATTCTCTCTCTCTGTCTCTGTCACCGTTCCTCATTCGCATGGAGAACGACACCGCCGCCGCCGCTAACAATAACACCACCGCCACCGCCGCCGCGAAAGCAGGTTCCGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCAGATGGCAGAACAAGTGGAGGCAGAAGAAGAAGAAGAAGAAGAAGAAGATCGACAAGCCGATGAAGGCGAAGGAGAAGAAACTGGATCTGCTGCGCCCAACCCGCGCCAACCTTCCAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGAGGATGAGGATGATGATGAAGATGATGAAAATGAGGAGTATGAGGATGAAGATGCATTTGATGCCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGTATTGAATTTGACCCAGATCTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCCGAAGAGAGGGAAATGGCAGTTAGACTGTTGGCTCTTGCTGGGATAAATGATCGTAAGTTTTCTTGGCTATGACTGTAACTTGATGGATTTTTATTTAATTCTTTTTTATAATCATCCACT >Glyma10g43120.3 sequence type=transcript gene model=Glyma10g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTCCTCGATTTTGCTCTTTCTCTCCAACGTCACCACACCCTTCCCTATTTCTTTCTTTATTTATTTTACAATAACATATAATAATAATTGTTACACTATGATATATAATATAATCATATTTACATATATATTCTCTTGGATTGATTCGATCCTCTAATCTATCTCCGCTATTCCTCATTCTCCTTCTTAAAATTCATCTTCAATTCAATTCTCTCTCTCTGTCTCTGTCACCGTTCCTCATTCGCATGGAGAACGACACCGCCGCCGCCGCTAACAATAACACCACCGCCACCGCCGCCGCGAAAGCAGGTTCCGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCAGATGGCAGAACAAGTGGAGGCAGAAGAAGAAGAAGAAGAAGAAGAAGATCGACAAGCCGATGAAGGCGAAGGAGAAGAAACTGGATCTGCTGCGCCCAACCCGCGCCAACCTTCCAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGAGGATGAGGATGATGATGAAGATGATGAAAATGAGGAGTATGAGGATGAAGATGCATTTGATGCCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGTATTGAATTTGACCCAGATCTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCCGAAGAGAGGGAAATGGCAGTTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGAAGAGGACATAGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGAGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGTTTACCTTCAGTCAACTACAAGACTGGGAGTGATCAACATGGAAGCCATGATTCGTATGTGCAGATTGTTACTTCTAACCTTAACTGTGTCCATGATATACCATAGTGCCTGATTGCTGTGGTCCTGTGTCAGGTGTGTCATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACTGAGGTATCTGCTTCTGGGAGCAACTTGTAGGAGGACTTAATAGATGTTCTTCACTTCAAATTGAAGAAAATTTGTGCCAAGTTGGGGGCTAATATCCCTTATTTTAATAGCATTTCCATATTAGGGAGATAGTCTGTGCTATGTCTCCAGCTCCTTCATTTTAAATGTAACATGTGACTTTTGGAACCAGCTCTCTACATTGTCTTTATTCTAATGGAAAATGAATGGCATTTAAGTGGCCAGTTCTTTTACAGGGTCCGAGGGGATAACTGTTGTGATGGTTATTG
>Glyma10g43120.1 sequence type=CDS gene model=Glyma10g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAACGACACCGCCGCCGCCGCTAACAATAACACCACCGCCACCGCCGCCGCGAAAGCAGGTTCCGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCAGATGGCAGAACAAGTGGAGGCAGAAGAAGAAGAAGAAGAAGAAGAAGATCGACAAGCCGATGAAGGCGAAGGAGAAGAAACTGGATCTGCTGCGCCCAACCCGCGCCAACCTTCCAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGAGGATGAGGATGATGATGAAGATGATGAAAATGAGGAGTATGAGGATGAAGATGCATTTGATGCCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGTATTGAATTTGACCCAGATCTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCCGAAGAGAGGGAAATGGCAGTTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGAAGAGGACATAGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGAGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGTTTACCTTCAGTCAACTACAAGACTGGGAGTGATCAACATGGAAGCCATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCAGTTTGTAGTACTGAGGTATCTGCTTCTGGGAGCAACTTGTAG >Glyma10g43120.2 sequence type=CDS gene model=Glyma10g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAACGACACCGCCGCCGCCGCTAACAATAACACCACCGCCACCGCCGCCGCGAAAGCAGGTTCCGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCAGATGGCAGAACAAGTGGAGGCAGAAGAAGAAGAAGAAGAAGAAGAAGATCGACAAGCCGATGAAGGCGAAGGAGAAGAAACTGGATCTGCTGCGCCCAACCCGCGCCAACCTTCCAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGAGGATGAGGATGATGATGAAGATGATGAAAATGAGGAGTATGAGGATGAAGATGCATTTGATGCCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGTATTGAATTTGACCCAGATCTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCCGAAGAGAGGGAAATGGCAGTTAGACTGTTGGCTCTTGCTGGGATAAATGATCGTAAGTTTTCTTGGCTATGA >Glyma10g43120.3 sequence type=CDS gene model=Glyma10g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAACGACACCGCCGCCGCCGCTAACAATAACACCACCGCCACCGCCGCCGCGAAAGCAGGTTCCGGAGGAGTGAAATCGAACAACCATAACCTAGAAGAGGAGCATTCCAATTTGAATGGCGAGGAGCAGATGGCAGAACAAGTGGAGGCAGAAGAAGAAGAAGAAGAAGAAGAAGATCGACAAGCCGATGAAGGCGAAGGAGAAGAAACTGGATCTGCTGCGCCCAACCCGCGCCAACCTTCCAGAACCCCTTTCACTAATCTCAGCCAGGTCGATGCTGACCTCGCTCTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATATATGATGCTGAGAATGAATAATGATGGAAGTGATTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGGGGATGATTTTGATGATCTACATGATGGCACTGATGTGGATGAGGATGAGGATGAGGATGATGATGAAGATGATGAAAATGAGGAGTATGAGGATGAAGATGCATTTGATGCCCATGCTCATGCTAGTGCTGGAGAACATGATAATCCCAGTATTGAATTTGACCCAGATCTATTTTCAAGTGATGAAGCATATGCAAGAGCATTACAAGAAGCCGAAGAGAGGGAAATGGCAGTTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGAAGAGGACATAGAGGAGCATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAACTTTCATACGAGGAATTACTGGCATTGAGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGTTTACCTTCAGTCAACTACAAGACTGGGAGTGATCAACATGGAAGCCATGATTCGTATGTGCAGATTGTTACTTCTAACCTTAACTGTGTCCATGATATACCATAG
>Glyma10g43120.1 sequence type=predicted peptide gene model=Glyma10g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENDTAAAANNNTTATAAAKAGSGGVKSNNHNLEEEHSNLNGEEQMAEQVEAEEEEEEEEDRQADEGEGEETGSAAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDEDEDDDEDDENEEYEDEDAFDAHAHASAGEHDNPSIEFDPDLFSSDEAYARALQEAEEREMAVRLLALAGINDREEEDIEEHGANSQDAWEDVDPDELSYEELLALSEVVGTESRGLSTDTIACLPSVNYKTGSDQHGSHDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* >Glyma10g43120.2 sequence type=predicted peptide gene model=Glyma10g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENDTAAAANNNTTATAAAKAGSGGVKSNNHNLEEEHSNLNGEEQMAEQVEAEEEEEEEEDRQADEGEGEETGSAAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDEDEDDDEDDENEEYEDEDAFDAHAHASAGEHDNPSIEFDPDLFSSDEAYARALQEAEEREMAVRLLALAGINDRKFSWL* >Glyma10g43120.3 sequence type=predicted peptide gene model=Glyma10g43120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENDTAAAANNNTTATAAAKAGSGGVKSNNHNLEEEHSNLNGEEQMAEQVEAEEEEEEEEDRQADEGEGEETGSAAPNPRQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDEDEDDDEDDENEEYEDEDAFDAHAHASAGEHDNPSIEFDPDLFSSDEAYARALQEAEEREMAVRLLALAGINDREEEDIEEHGANSQDAWEDVDPDELSYEELLALSEVVGTESRGLSTDTIACLPSVNYKTGSDQHGSHDSYVQIVTSNLNCVHDIP*
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