SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03470 | AT | Annotation by Michelle Graham. TAIR10: Protein phosphatase 2A regulatory B subunit family protein | chr5:866795-868872 FORWARD LENGTH=495 | SoyBase | E_val: 2.00E-114 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0042325 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of phosphorylation | SoyBase | N/A | ISS |
| GO:0000159 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein phosphatase type 2A complex | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG2085 | KOG | Serine/threonine protein phosphatase 2A, regulatory subunit | JGI | ISS | |
| PTHR10257 | Panther | PROTEIN PHOSPHATASE 2A, REGULATORY SUBUNIT | JGI | ISS | |
| PTHR10257:SF3 | Panther | gb def: putative protein phosphatase 2a regulatory subunit b [oryza sativa] | JGI | ISS | |
| PF01603 | PFAM | Protein phosphatase 2A regulatory B subunit (B56 family) | JGI | ISS | |
| UniRef100_B9RMK6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2a, regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9RMK6_RICCO | SoyBase | E_val: 5.00E-114 | ISS |
| UniRef100_UPI000233D21B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D21B related cluster n=1 Tax=unknown RepID=UPI000233D21B | SoyBase | E_val: 0 | ISS |
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Glyma10g42970 not represented in the dataset |
Glyma10g42970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g283500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42970.1 sequence type=CDS gene model=Glyma10g42970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGAGCCAGAAAGTGTCACCAACACCATCATCAACAAGCAGCCCAAAGAAAAACCCAAAAACACTCCATGAAATGTTTCTGCAGGAGAGTCCTCATTTCATCATCCCATCTTCTCCTTCAGGAAATGAAGAACTTCTCTCCGCCATTTCTTACTGCACCTTTGTTTTCACCTTCTCTGACCCTTCAGAATCTCCTGCACAAAGAGACTCAAAGAGGCTTCAACTCACAAGACTAGTCTCCATATTGAAGTCCTCCAAGAAGCCAGTGCATGAAAAAGTTTTGGGGCCTCTAGTGGCCATGATCTCAGCAAACCTCTTCAGGCCACTCCCTCCACCTTCCAACCCTACTTCTAATTCCATCACAGAATTGCCAGAAGAAGAAGACCCCATCTCTATATTTTCACCCCTTTGGTCACATCTCCAAATAGTTTATGAGATACTTCTGAAGCTTGTTAACAGCACAGACCAAAAAGTACTGAGAGAACATATGAATCATTGTTTCCTCCGCAATCTCCAAGCACTTTTTCAGTCTGAGGATCCAAGGGAGCGTGAGAGTTTGAAAAACGTGTATCACAAGATATACTCGAAGTTCATCGCTGATCGTTCCTTGATGAGGAAATGGATGACCGAGGTGCTCTTGAACTATGTGTTTGAGACAGAGAAGCATCCGGGGATTGGGGACTTGCTTGAGATATGGGGAACCATAATCAATGGCTTTACCGTGCCACTCAAGGAAGAGCACAAGCTGTTCCTCATGAGAGTGCTTATTCCTCTACACAAGACAAAGGGGATGCAAGTGTACCATAGGCAATTGGCTTATTGCGTGTCACAATTTGTGCAGAAGGAGCCTATGCTTGGAGGAGTTGTTGTTAGAGGAATTTTGAAGTACTGGCCTGTCACAAACTGTCAAAAAGAAATCTTGCTAATTGGGGAATTGGAAGATCTGGTCGAGAATTTAGACCCTGACCAGTATCGTAAATTGGCCTTGCCCTTATGTACCCAGATCACAAAATGCATAAACAGTTGGAATTCCCAGGTAGCCGAGCGTGCACTCTATGTGTGGAACAATGAGCAGTTTGTGAAAATGGCATTAATAGGAACAGTAGAAGTATTTACTGTGATTGTAGAAGGCATGGAAAAGAACCTGAAGTGGCATTGGAGCAAGAGTGTGAGGCAACTAACAGAGAGTGTGAAGGTGATGCTGGAAGAAATGGAACCAGATCTGTATTCAAAGGGTCTCATGGACATGGAAGCTAAAGAATCAGTGGCACATCAAGAAGATATCAAGAGAAAAAAGAGATGGGAAAGAATAGAATTGGAAGCTGCCAAGAATCAGTTTCTCAATCCACGTTATATACGTGTCTCTTACTAA
>Glyma10g42970.1 sequence type=predicted peptide gene model=Glyma10g42970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSQKVSPTPSSTSSPKKNPKTLHEMFLQESPHFIIPSSPSGNEELLSAISYCTFVFTFSDPSESPAQRDSKRLQLTRLVSILKSSKKPVHEKVLGPLVAMISANLFRPLPPPSNPTSNSITELPEEEDPISIFSPLWSHLQIVYEILLKLVNSTDQKVLREHMNHCFLRNLQALFQSEDPRERESLKNVYHKIYSKFIADRSLMRKWMTEVLLNYVFETEKHPGIGDLLEIWGTIINGFTVPLKEEHKLFLMRVLIPLHKTKGMQVYHRQLAYCVSQFVQKEPMLGGVVVRGILKYWPVTNCQKEILLIGELEDLVENLDPDQYRKLALPLCTQITKCINSWNSQVAERALYVWNNEQFVKMALIGTVEVFTVIVEGMEKNLKWHWSKSVRQLTESVKVMLEEMEPDLYSKGLMDMEAKESVAHQEDIKRKKRWERIELEAAKNQFLNPRYIRVSY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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