SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30130 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF630 and DUF632) | chr4:14735401-14737793 FORWARD LENGTH=725 | SoyBase | E_val: 2.00E-62 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-embryonic morphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0048451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: petal formation | SoyBase | N/A | ISS |
| GO:0048453 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sepal formation | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21450 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04782 | PFAM | Protein of unknown function (DUF632) | JGI | ISS | |
| PF04783 | PFAM | Protein of unknown function (DUF630) | JGI | ISS | |
| UniRef100_Q7X997 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bzip-like transcription factor-like n=1 Tax=Oryza sativa Japonica Group RepID=Q7X997_ORYSJ | SoyBase | E_val: 5.00E-166 | ISS |
| UniRef100_UPI000233D21A | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D21A related cluster n=1 Tax=unknown RepID=UPI000233D21A | SoyBase | E_val: 0 | ISS |
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Glyma10g42920 not represented in the dataset |
Glyma10g42920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g24090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g283000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42920.2 sequence type=CDS gene model=Glyma10g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATGTGTTGCCTCCAAACTAGAGGAAGAAGAAGAAGTGGTGGCTATTTGTAGAGAGAGAAAGCGTCTTTTAAAGCAAGCTGTGGAGAAAAGATATGCACTTGCTGAGGCTCATTGTAAGTATTTTCACTCTCTGAATGCAGTAGCTGCGGCCATTAAGCTCTTTGTTGCACGCCACTCTTCACCTTCATCACCTTTCCTCATAACTTTCCCTCCTCCTTGCCCTTCTTCTCCTTCTCCACCTACTGAGAATGTCATTACGAACCCCATGTTCCTCCAGCAGACACCCTCAGAAAACAAGCATCAAGCGATTGCTGCTTGTGACTCATGCATCTCTTCAACAACCTCCGAGTCTTCTGAGGAAGAGAGTGAAGAAAAAAGGGAAGGAGAGGAGGGTGAAGAAGGTAAGGGAGAAGAAGACCAACATCAACAACAACCATGTGGGTACTATTGCATGCCTATGACTATGTCCATGTCCATGTCCATGTCCATGTCTATGCCTATGCCACCTTCAATGCCATCCCCTCAGAGAGATTTTGGATGGGACTTCTTCTACCCTTTGGACAGTATGAGGAGTGAGGTCATGAGTGGCTACCACAGGAACTCAGATGATGATTTAAGGGCAGTAAGAGAGGAGGAGGGGATTCCTGAATTAGAGGAAGAAGTGGAGAGAGAAGAGGTTCAGCACAAAGTGGTGAGTGTTGAAGAGAATAATAGCAATAATCATAATAATAAGAGTAATAACGAAGGTGCTGTTGAGCAAGTGTTGAGTGGTGTTGAAGCAGTTAAGGTGGTTGATGTGGCCACTGAAAACCAAGGGGAGCAAAGGGGGCTTGCAGTTCTTGATACACCAGCAGAGGGGAGAGAGTTGCTTGAAGCTTTGAAAGACATTGAGGACCATTTTCTCAAGGCTTACGATTCTGGTAAGGAGGTAACCAGAATGCTGGAAGCTAATAGAACCCCCCTTCATTCTAGTTTGGATGAAATAAAAGAAAGTTCGACTAAACTCATTCTTGCAATAACATGGAAGTCCATTTCATCTAGGCAATCATCATGCAAGAGTCTTATGGTTCCAAATGTGAAAAATTCTTCAACTCGGGTGGAATATAAAAATGATCTGTTTGATGATTATGGAGGAATGGATTCGGGAAGTCATTTATTAACCTTAGGAAGGTTATATGCATGGGAAAAGAAACTGTTTGAGGAGGTTAAGGCTGGAGATAGCACACGGAAAAATTACGAAAAAAAATGCACACAGTTGAGAAGTAAGAATGTTAGAGGAGATGATCTACTAAGCACAGACAAAACTAAAACTGAAGTGAAAGATCTATATGCTGGGATCTTGGTTGCAATTCGGCGTGCAGAGTCAATCTCAAAGAGAATTGAGAAAATGAGAGATGAAGAATTACAACCTCAAATTCTTGAACTGTTAAAAGGCCTGACTCAGTCATGGAAAATCATGTTGGAGTCCCATGAAACCCAGAAGAAGATTCTATCTGAAGTCAAATACTTCACATGCGCCACGTATGGTAAATTCTGCAACCAATCTCATGGATTTGCAACTCTTCAGCTCGAAGCTCAGCTTCAAAATTGGCGGGACTGCTTCAAAGAGTACACCGCAGCGCAAAAGGCATATGTTGAAGCTCTCCATGGATGGCTGAGTAAGTTCATAGTCCCTGAAGTTGAGTTTTACTCAAGAAGCAAAAATGTTGCAATGCAATACCAAGTCAACGGGCCACCGCTGCTTGTGATATGCAACGACTGGTTAGCTTCGCTGCAAAAGTTACCCGATAAAATGGTAACAGTTGCATTGAAAAGTGTAGTGAAGGATGTTAGAACTTTGTGGCTTCAGCAAAACAAAGAGAAACAGCAGAAAAGGAAGGTAGATAGGTTAACAAGAGATTTGGAGAGAAGGTATTCTTCAGCATCATCGCATAAAGTGGTGGAGACTAGGATGCTCGAGTATCACGTCACGGACCGCGAATCAGAGGCCGGAAATGATCATCATCAAGAGGAGGAGGAGTGCATGATGGAGAAGAGTGATCATTTGGAGACACTGAGGAGAAAAGTGGAGGCGGAGAAGGAGAAGCACCACAGTTGCATGCAAGAAACACAGAGGATCACCTTACATGGATTGCAATCTGGGTTTTCTCTAGTGTTTGAATCATTGACAGAGTTCTCCAAAGCATCACAAAAAATGTACAATGGCCTTATAACTTATAGTGAAAACAGTGACAAGGTTGGGAACATTACGTATATAGAGGGTGGTGGCTGCAATGTTGAAAATTGCAACGGACAATAG
>Glyma10g42920.2 sequence type=predicted peptide gene model=Glyma10g42920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGCVASKLEEEEEVVAICRERKRLLKQAVEKRYALAEAHCKYFHSLNAVAAAIKLFVARHSSPSSPFLITFPPPCPSSPSPPTENVITNPMFLQQTPSENKHQAIAACDSCISSTTSESSEEESEEKREGEEGEEGKGEEDQHQQQPCGYYCMPMTMSMSMSMSMSMPMPPSMPSPQRDFGWDFFYPLDSMRSEVMSGYHRNSDDDLRAVREEEGIPELEEEVEREEVQHKVVSVEENNSNNHNNKSNNEGAVEQVLSGVEAVKVVDVATENQGEQRGLAVLDTPAEGRELLEALKDIEDHFLKAYDSGKEVTRMLEANRTPLHSSLDEIKESSTKLILAITWKSISSRQSSCKSLMVPNVKNSSTRVEYKNDLFDDYGGMDSGSHLLTLGRLYAWEKKLFEEVKAGDSTRKNYEKKCTQLRSKNVRGDDLLSTDKTKTEVKDLYAGILVAIRRAESISKRIEKMRDEELQPQILELLKGLTQSWKIMLESHETQKKILSEVKYFTCATYGKFCNQSHGFATLQLEAQLQNWRDCFKEYTAAQKAYVEALHGWLSKFIVPEVEFYSRSKNVAMQYQVNGPPLLVICNDWLASLQKLPDKMVTVALKSVVKDVRTLWLQQNKEKQQKRKVDRLTRDLERRYSSASSHKVVETRMLEYHVTDRESEAGNDHHQEEEECMMEKSDHLETLRRKVEAEKEKHHSCMQETQRITLHGLQSGFSLVFESLTEFSKASQKMYNGLITYSENSDKVGNITYIEGGGCNVENCNGQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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