SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16920 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 23 | chr2:7334559-7338827 REVERSE LENGTH=1102 | SoyBase | E_val: 0 | ISS |
| GO:0006301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: postreplication repair | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0016881 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity | SoyBase | N/A | ISS |
| KOG0895 | KOG | Ubiquitin-conjugating enzyme | JGI | ISS | |
| PTHR24067 | Panther | UBIQUITIN-CONJUGATING ENZYME E2 | JGI | ISS | |
| PTHR24067:SF59 | Panther | UBIQUITIN-CONJUGATING ENZYME E2 T | JGI | ISS | |
| PF00179 | PFAM | Ubiquitin-conjugating enzyme | JGI | ISS | |
| UniRef100_I1LF49 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LF49_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9AWU5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: P0044F08.17 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q9AWU5_ORYSJ | SoyBase | E_val: 0 | ISS |
|
Glyma10g42850 not represented in the dataset |
Glyma10g42850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g24150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g282000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42850.1 sequence type=CDS gene model=Glyma10g42850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGTTCAACAACATGAAGCGCTTTCTGAAGGCAATGAGCCTGCTGAAAATGCTTGTGCTAGTGGTTTCCTGAACCAAGGTGCTCTTGCCAGTGAGTCTGCCTACAGCGATCCAAGGGTAAACACTGAAAGTAGTGAAGTTAATGAACCGGGTGACAATTCTTATAAGGAAAGTAATACACCACATATCTATAGACAAGATGTTGTGAAAAATACTATCAGTGGCATGATTGGGATTGTGACAGAAGTTGCTGGTGATTCTGATTCTGATTCAGATAGCAGCGTCACTGACGACGAAAATGATACTGAGGATGAGGATGGTGATGATGAGGAAGGCGATGGCATTAATAATGCTAGTAGAAATTCTGAAAGTAATGGTGCTGCTGGGCATTGTAAAACCGATGCTCTTCTGGCTGACCAGCTGCATGTACTGTGGATGGACAAATCTGAATCCACTCTAAATTTCAGCGACGTTGAAGTTGTTGATCGCGGATTTTTACATGGGGATTTTGTTGCTGCTGCTTCAGACCCTACTGGGCGAGTGGGTGTAGTGGTTGATGTCAATATATGTGTGGATCTGTTGGCCCATGATGGATCTATAATAAAAGATGTCTCATCAAAAAATTTAAAACGAATTAGGGATTTCACTGTCGGTGATTATGTGGTGCTTGGACATTGGCTAGGAAGAATTGATGATGTTTTGGATAATGTAACTGTCTTATTTGATGATGGTTCAGTTTGTAAGGTCTCAAAAGCAGATCCATTGAATCTTAAACCAATTTCTAAGAATATTCTTGAAGATGGGCATTTTCCTTATTACCCAGGGCAATGGGTAAGGGCTAGCTCCTCATCAGTATTCAAGAATTCAAGATGGCTGTCTGGCTTGTGGAAAGCTAATAGGCTAGAAGGTACAGTCACTAAAGTTACAGTTGGATCGGTGTTTGTTTATTGGATAGCATCTGCAGGTTATGGGCCATATTCTTCTACTGCCCCAGCTGAGGAGCAGAGTCCAAAAAACTTAAAATTGTTGTCCTGTTTTGCTCATGCAAATTGGCAATTGGGTGACTGGTGTCTCCTACCCTCATCTGAACTGTCATCCTCAGCTTCCATGGATAAAGGCATATCAAAATTGGAACTTAACAATTCTGCTAACAATGAATTAGATTCTAATCAGACAGGAAGTGGATATAAAAGGGCCCGAAAGAAAGAGGAAAGCTTTGAGAAAGCTCTTTTGATTGCCAACACAAGAACAAAAGTTGATGTTGCATGGCAAGATGGAACAGTAGAGCGTGAACTAAATTCTACAAGTTTAATTCCTATAGATAATCCTGCTAGGCGAGTTGGGGTTGTGAGAAGTGTTAATGCCAAGGAGCGGACAGCTTGTGTGAGGTGGTTAAAAAAAGTTGCCAGAGCAGAAGATCCTCGAGAGTTTGACAAGGAGGAAGTTGTTAGTGTATATGAGCTAGAGGGCCATCCAGATTATGATTACTGCTATGGGGATGTGGTTGTCCGCCTCTCACCTGTGTCTGTCTGTTCAGAAACAGCTTCTGTTGGAGAGTCCACTGAGAAATCAATGCAGAAAACTGAAGAGAGTGGGATTAAAATCGATGTAAATATCCAAACTGGTGAAACTTTTGTGCAATTTTCTGACCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACTTGGGCTGATGGGATGGTATCAATGGTTGGACCCCAAGCAATCTATGTGGTTGGTCGAGATGACGATGATGAATCAATTGCTGCTGGGAGTGAAATAAGTGATGCTGCAAGCTGGGAAACTGTTAATGACGATGAAATGGAAGTCCTTGAGGATTCCAGAGAGGATATTGAGAGGGAAAATTCAAGCAGTGTTACTTCTGAGGCAGAAGAAAGTGGAGAGAATGATTTTGGTAGGACTGCAGCTCTCTCTGTTCCCCTAGCAGCATTTCGATTTGTCACTAGACTTGCCAGTGGAATATTCTCAAGAGGCTCAAGGAACTTGGATTCTATTCCCTTGGAGATAAAAGCTGAACGTGAACATCCATCACCTGTAGTTAATGATGAGTCTACTTCACAGAAACATATTGCAATTGATGCTGATAATTCAGGCAATAAGAATGAAAGGTATGATGAGGTTGTTTCAGAAGCAACTGAAACTCTGGAAGCAAGTGCGGCACTTTGTAGCTTGGGAAATGAAGATGCTCCTGCAACTGCAAGTTGTGATAATGACACTTGCAGTTTGAAACATTTTGACATAACTAAAGATCCATCGGACCACTATTTTATTGGTGCAAATGGACAGAGTAACAACCGGAAATGGTTCAAGAAAGTGCAACAAGATTGGAGCATATTGCAGAATAACCTTCCTGAGGAAATCTATGTACGAGTTTATGAAGATAGAATGGATCTCTTGAGAGCAGTTATTGTAGGGCCATACGGAACCCCTTACCAAGATGGACTCTTTTTCTTTGATTTTCACCTTCCGCCAGAATACCCTGATGTTCCACCGTCAGCATACTATCATTCTGGTGGTTGGCGGATTAACCCTAATTTGTATGAGGAAGGGAAGGTTTGCCTTAGCCTTCTAAATACATGGACAGGCAGAGGAAATGAAGTATGGGATCCAAAATCTTCTAGCATCCTTCAAGTCCTAGTTTCACTGCAAGGCTTAGTACTCAACTCTAAGCCTTACTTCAATGAAGCTGGGTATGATAAGCAGGTTGGAACAGCTGAAGGAGAGAAAAATTCATTGTCATACAATGAGAATACCTTTTTACTTAACTGCAAGACTATGATGTATCTTATGAGGAAACCACCCAAGGATTTTGGAGTGCTCATCAAAGAACATTTTAGGAGGCGGGGTCATAAAATCCTTAAGGCTTGTGATGCTTATATGAAAGGTTTCTTGATTGGCTCGCTGACTAGAGAAGCCTCTGTAAGTGAAAAGAGCAGTCAGAATTCAACCTCTGTGGGTTTCAAGTTGATGTTAGCCAAGATAGTGCCAAAGCTTTTCTTGTCACTATGTGAGGTTGGAGCTGATTGTGAGGAATTTAAGCATCTGAAAGATTTGTAG
>Glyma10g42850.1 sequence type=predicted peptide gene model=Glyma10g42850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGVQQHEALSEGNEPAENACASGFLNQGALASESAYSDPRVNTESSEVNEPGDNSYKESNTPHIYRQDVVKNTISGMIGIVTEVAGDSDSDSDSSVTDDENDTEDEDGDDEEGDGINNASRNSESNGAAGHCKTDALLADQLHVLWMDKSESTLNFSDVEVVDRGFLHGDFVAAASDPTGRVGVVVDVNICVDLLAHDGSIIKDVSSKNLKRIRDFTVGDYVVLGHWLGRIDDVLDNVTVLFDDGSVCKVSKADPLNLKPISKNILEDGHFPYYPGQWVRASSSSVFKNSRWLSGLWKANRLEGTVTKVTVGSVFVYWIASAGYGPYSSTAPAEEQSPKNLKLLSCFAHANWQLGDWCLLPSSELSSSASMDKGISKLELNNSANNELDSNQTGSGYKRARKKEESFEKALLIANTRTKVDVAWQDGTVERELNSTSLIPIDNPARRVGVVRSVNAKERTACVRWLKKVARAEDPREFDKEEVVSVYELEGHPDYDYCYGDVVVRLSPVSVCSETASVGESTEKSMQKTEESGIKIDVNIQTGETFVQFSDLSWVGNITGLKNGDIEVTWADGMVSMVGPQAIYVVGRDDDDESIAAGSEISDAASWETVNDDEMEVLEDSREDIERENSSSVTSEAEESGENDFGRTAALSVPLAAFRFVTRLASGIFSRGSRNLDSIPLEIKAEREHPSPVVNDESTSQKHIAIDADNSGNKNERYDEVVSEATETLEASAALCSLGNEDAPATASCDNDTCSLKHFDITKDPSDHYFIGANGQSNNRKWFKKVQQDWSILQNNLPEEIYVRVYEDRMDLLRAVIVGPYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFGVLIKEHFRRRGHKILKACDAYMKGFLIGSLTREASVSEKSSQNSTSVGFKLMLAKIVPKLFLSLCEVGADCEEFKHLKDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
