Glyma10g42800 - SoyBase

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Report for Sequence Feature Glyma10g42800

Feature Type:	gene_model
Chromosome:	Gm10
Start:	49657452
stop:	49661069
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g42800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68010	AT	Annotation by Michelle Graham. TAIR10: hydroxypyruvate reductase \| chr1:25493418-25495720 FORWARD LENGTH=386	SoyBase	E_val: 0	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0009854	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidative photosynthetic carbon pathway	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0010304	GO-bp	Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0042631	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation	SoyBase	N/A	ISS
GO:0071482	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to light stimulus	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0008266	GO-mf	Annotation by Michelle Graham. GO Molecular Function: poly(U) RNA binding	SoyBase	N/A	ISS
GO:0008465	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycerate dehydrogenase activity	SoyBase	N/A	ISS
KOG0069	KOG	Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)	JGI		ISS
PTHR10996	Panther	2-HYDROXYACID DEHYDROGENASE	JGI		ISS
PTHR10996:SF22	Panther	ERYTHRONATE-4-PHOSPHATE DEHYDROGENASE	JGI		ISS
PF00389	PFAM	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	JGI		ISS
PF02826	PFAM	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	JGI		ISS
UniRef100_B0M1A3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal hydroxypyruvate reductase n=1 Tax=Glycine max RepID=B0M1A3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_B0M1A3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Peroxisomal hydroxypyruvate reductase n=1 Tax=Glycine max RepID=B0M1A3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g42800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g42800 not represented in the dataset	Glyma10g42800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g42800

Paralog	Evidence	Comments
Glyma20g24200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g42800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g281400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g42800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g42800

Limit To All Plant Sequences

>Glyma10g42800.2   sequence type=transcript   gene model=Glyma10g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAATAATTTTGGTTTTAGTGTGGATTTTTCTTGCTTTTGGCTTTGTGGGTATGTGATGGAGTTCCTATTGCAGTTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCGGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAACGTGGATGTTGATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTCACTGAGACAACAGCAGAGTTGGCAGCTTCACTAACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGAGCAGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGGCAAACAGTTGGTGTAATTGGAGCTGGTCGAATTGGATCTGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATTTATTATGATCTCTACCAGTCCACACGACTAGAAAAGTTTGTCACAGCCTATGCCGCATTCTTGAAAGCAAATGGTGAAACCCCAGTGACTTGGAAAAGGGCAGCAACCATGGATGAGGTCCTCCAGGAGGCAGATATAATTAGTCTTCATCCTGTCTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTAGCTAAGATGAAGAAGGAAGCAATTCTTATAAATTGCAGTAGAGGGCCTGTTATTGATGAAGCTGCACTTGTGGAGCATTTAAAACATAACCCAATGTTTCGAGTAGGCCTTGATGTGTTTGAGGAAGAGCCCTACATGAAACCTGGGCTTGCAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCCTCCAAGTGGACTCGTGAGGGAATGGCTACACTAGCAGCTCTAAACGTGCTGGGGAAGGTTAAAGGGTACCCAGTTTGGTTTGATGCCAATAAGGTGGAACCATTCCTCAATGAGAATGCTCGACCACCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGGGTTTGCCAACTTCAAAGCTATAAACACACATGGTTCAAGGGCCTCAAATTGCACAAATGGCCAATTTTTGTGTGTTGGGTTAGGCTCTGGGGCTAGTCTGTTCTTTTTTGTGTATGTACTATGTAGAGTGTCGATGGCACTGTGCATATAAAGACTGTGATGTTAATAAGCATCGTGTGTTTGTAGTATTTCAAACATTAATTAAACATAAATGAAGTTATTCCTTATGTCCCTACACTAGTTTAGTTGGTTTGTTTTTACATTTAAAGGTTAACAGCATGCTCACTACAATTTTGATTGTTTTGCACTTAATTTC

Coding sequences of Glyma10g42800

Limit To All Plant Sequences

>Glyma10g42800.1   sequence type=CDS   gene model=Glyma10g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAGCCAGTGTCCATTGAGGTATGGAACCCAAGTGGCAAATACAGAGTTGTCAGCACCAAACCAATGCCTGGAACTCGTTGGATCAATCTTCTCATTCAAAATGATGTTCGCCTTGAAATATGTACCGAGAAGAAAACGATTTTGTCAGTTGAAGACATCATTGCTTTGATTGGTGATAAGTGCGATGGAGTTATTGGACAGTTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCGGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAACGTGGATGTTGATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTCACTGAGACAACAGCAGAGTTGGCAGCTTCACTAACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGAGCAGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGGCAAACAGTTGGTGTAATTGGAGCTGGTCGAATTGGATCTGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATTTATTATGATCTCTACCAGTCCACACGACTAGAAAAGTTTGTCACAGCCTATGCCGCATTCTTGAAAGCAAATGGTGAAACCCCAGTGACTTGGAAAAGGGCAGCAACCATGGATGAGGTCCTCCAGGAGGCAGATATAATTAGTCTTCATCCTGTCTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTAGCTAAGATGAAGAAGGAAGCAATTCTTATAAATTGCAGTAGAGGGCCTGTTATTGATGAAGCTGCACTTGTGGAGCATTTAAAACATAACCCAATGTTTCGAGTAGGCCTTGATGTGTTTGAGGAAGAGCCCTACATGAAACCTGGGCTTGCAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCCTCCAAGTGGACTCGTGAGGGAATGGCTACACTAGCAGCTCTAAACGTGCTGGGGAAGGTTAAAGGGTACCCAGTTTGGTTTGATGCCAATAAGGTGGAACCATTCCTCAATGAGAATGCTCGACCACCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGGGTTTGCCAACTTCAAAGCTATAA

>Glyma10g42800.2   sequence type=CDS   gene model=Glyma10g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTCCTATTGCAGTTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCTTTGAGCAAAGCGGGAGGCAAAGCTTTCAGTAACATGGCTGTTGGTTATAACAACGTGGATGTTGATGCTGCAAACAAGTATGGTGTTGCTGTTGGAAATACTCCTGGAGTGCTCACTGAGACAACAGCAGAGTTGGCAGCTTCACTAACTTTGGCAGCTGCTAGAAGGATAGTTGAGGCAGATGAGTTCATGAGAGCAGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGGCAAACAGTTGGTGTAATTGGAGCTGGTCGAATTGGATCTGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAACCTAATTTATTATGATCTCTACCAGTCCACACGACTAGAAAAGTTTGTCACAGCCTATGCCGCATTCTTGAAAGCAAATGGTGAAACCCCAGTGACTTGGAAAAGGGCAGCAACCATGGATGAGGTCCTCCAGGAGGCAGATATAATTAGTCTTCATCCTGTCTTGGATAAAACCACTTATCATCTAGTCAACAAGGAAAGACTAGCTAAGATGAAGAAGGAAGCAATTCTTATAAATTGCAGTAGAGGGCCTGTTATTGATGAAGCTGCACTTGTGGAGCATTTAAAACATAACCCAATGTTTCGAGTAGGCCTTGATGTGTTTGAGGAAGAGCCCTACATGAAACCTGGGCTTGCAGAGTTGAAGAATGCCATTGTGGTACCCCACATTGCATCTGCCTCCAAGTGGACTCGTGAGGGAATGGCTACACTAGCAGCTCTAAACGTGCTGGGGAAGGTTAAAGGGTACCCAGTTTGGTTTGATGCCAATAAGGTGGAACCATTCCTCAATGAGAATGCTCGACCACCAGCTGCATGCCCAAGCATTGTTAATGCAAAAGCCCTGGGTTTGCCAACTTCAAAGCTATAA

Predicted protein sequences of Glyma10g42800

Limit To All Plant Sequences

>Glyma10g42800.1   sequence type=predicted peptide   gene model=Glyma10g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQNDVRLEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVDAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRAATMDEVLQEADIISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEAALVEHLKHNPMFRVGLDVFEEEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKVKGYPVWFDANKVEPFLNENARPPAACPSIVNAKALGLPTSKL*

>Glyma10g42800.2   sequence type=predicted peptide   gene model=Glyma10g42800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFLLQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVDAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRAATMDEVLQEADIISLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEAALVEHLKHNPMFRVGLDVFEEEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKVKGYPVWFDANKVEPFLNENARPPAACPSIVNAKALGLPTSKL*

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