SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G32640 | AT | Annotation by Michelle Graham. TAIR10: Sec23/Sec24 protein transport family protein | chr4:15742661-15750424 FORWARD LENGTH=1080 | SoyBase | E_val: 0 | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006886 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular protein transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0030127 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: COPII vesicle coat | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1984 | KOG | Vesicle coat complex COPII, subunit SFB3 | JGI | ISS | |
| PTHR13803 | Panther | SEC24-RELATED | JGI | ISS | |
| PF00626 | PFAM | Gelsolin repeat | JGI | ISS | |
| PF04810 | PFAM | Sec23/Sec24 zinc finger | JGI | ISS | |
| PF04811 | PFAM | Sec23/Sec24 trunk domain | JGI | ISS | |
| PF04815 | PFAM | Sec23/Sec24 helical domain | JGI | ISS | |
| PF08033 | PFAM | Sec23/Sec24 beta-sandwich domain | JGI | ISS | |
| UniRef100_B9RET0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein transport protein Sec24C, putative n=1 Tax=Ricinus communis RepID=B9RET0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F1A5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F1A5 related cluster n=1 Tax=unknown RepID=UPI000233F1A5 | SoyBase | E_val: 0 | ISS |
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Glyma10g42720 not represented in the dataset |
Glyma10g42720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g24330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g280700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42720.2 sequence type=CDS gene model=Glyma10g42720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCTCCTGTGCCTCCAGGGGCACCTAGACCCGGCAGTAACACTGCACAGCCACCTCCCCCTAATTACATCCCTAACATCAGGGGCGCTCCTGATGCACTAGCTAATAATATGCACAATTTGAATCTTAATCGGCCTCCTATGACCTCAAATCCTGTTTCTAGACCTCCACCCTTTGGTCAACCACCACCTTTTTCTTCCTCGGGCCCGTCGACGGGGATCCCTGGTTCCTCACCTCCATTTTCACGGCCCGGTCCACCTCCCGGAGCAATGGTGAGGCCTGTAGGGCCTCCTACTGGACCGCCATTTTCGACAGTACCGCCAAATGTTGCCCCTGGAAGGCCTACTGGGCCACCTCCTGGTCAACCTCCGTCTTTTGTATCAAGAGCCCCTCCCAGTTCTCCGTCTTTTGGTGCCTCACCAGTGTCTGGGGCTCCTCCTCCTGGCGGTTCTCCACCAGTCCGTTCACTTGGGCCACCTCCACCAACTCTTGGTGGTCGTCCAGGTCCTAGTCCAAGTCCTTTTACTTCGCCACCATTGACTACTCCCCCAGTCGTTGTACCCCCTACAAGTGCATCCGGTAATTTGATGAGTAATGGGCCACCTGTATTTTCTGCTGGGGCCATGCCAGGTCCCCAACGCTTCCCGGTTAGCAGTCTGCCACAACCTCCAGTTGGACCTCCACCAACAATGAGAGCTCCTCCAGGCCCTGCTGTTCAGCCCCAGCCCCCATATCCCATGGCATCTCAAGGAACAATGCAGCCTCCAGGTTCGCCTTTTGGAGCACCTTCTTGGCAGATGCAATCCCAGCAGGTAGCACCACCTCCTCCAGTTCCTGGTCCTTCACAGGCTCCTCGGATGTTTGGCATGCCACCACCACTGCCAAATCAATCTATGACTACTACTATATCACCTGCTGTTGGTCAAACTGGAGCCCCTATGGCAGGGCCTTCCAAAATTGATCCCAATCAAATTCCAAGACCTACTCCAGGTTCCTCAGTGATCTTGCATGAAACTCGTCAAGGCAACCAGGCAACTATTCCTCCGCCTGCTACAAGTGAATACATTGCAAGAGATACAGGGAATTGCAGTCCACGTTACATGAAGTGCACAATCAATCAGATTCCTTTCACTGCTGATCTTTTGACAACATCAGGAATGCAGTTGGCTATGTTAGTCCAACCTTTGGCCCTTCCACACCCATCTGAGGAGCCCATTCAAGTTGTTGATTTTGGGGAGAGTGGTCCTGTCCGTTGCTCACGTTGCAAGGCTTACATAAATCCCTTCATGAAATTCATTGATCAAGGAAGGCGTTTCATCTGCAACTTGTGTGGATTTAGTGATGAAACTCCACGGGACTACCACTGCAATTTAGGTCCAGATGGTCGGCGTAGAGATGCTGATGAAAGGCCTGAGCTGTGTAGAGGAACAGTTGAGTTTGTTGCTACAAAAGAATTCATGGTCCGTGAGCCCATGCCTGCTGTGTACTTCTTTCTCATTGATGTATCCATGAATGCTGTTCAAACTGGTGCAACAGCTGCAGCTTGCAGTGCCATAAGTCGAGTTATTAAAGACAAAGACCTTCCTGAGGGTCCTCGCACATTGGTGGGAGTTGCAACTTTTGACTCAACGATTCATTTCTACAACTTGAAACGTGCATTGCAGCAGCCACTGATGCTCATTGTTCCTGATGTCCAAGATGTTTATACTCCCTTGCAAACTGATGTAATTGTTCCACTATCTGAGTGCCGTCAACACTTAGAATTACTTCTGGAAAGCATTCCTACCATGTTCCAAAATAATAGAACCTCTGAATCAGCTTTTGGTGCAGCTATCAAGGCGGCTTTCCTTGCAATGAAGGACACTGGAGGAAAGCTGTTGGTTTTCCAGTCAGTCTTGCCATCTATAGGCATTGGTGCACTTTCTGCACGGGAGGCTGAAGGTAGAACAAATATCTCTGCAGGTGAAAAGGAAGCCCATAAGTTACTTCAACCAGCAGACAAAGCATTCAAGGAACTGGCTGTTGAATTTGCTGAGTATCAGGTTTGTGTTGATGTGTTTGTGACTACTCAGACTTATGTAGACATCGCTTCGATATCTGTTATCCCACGGACTACTGGTGGACAGGTCTATTACTATTACCCTTTCTCAGCTCTTTCTGATACTGCAAAACTTTACAATGATCTTAGATGGAACATCACTAGGCCACAAGGTTTTGAGGCTGTAATGCGTGTGAGGTGCAGTCAGGGTATTCAAGTGCAGGAATACTATGGCAACTTCTGTAAACGCATCCCAACTGATGTTGACCTACCTGGGATTGACTGTGACAAAACTTTCATGGTAACTTTGAAACACGATGATAAATTACAGGATGGATCAGAATGTGCTATTCAGTGTGCCCTTCTTTACACAACTGTGTATGGCCAAAGAAGAATACGTGTCATAACTTTGTCTCTGCCTGTCACTAGTATGCTCAGTAATCTGTTCCGTGCAGCTGATTTGGATACTCAATTTTGCTGTTTCTTGAAGCAAGCTGCTAGTGAGATTCCTTCAAAGCCACTCCCACTTGTTCGGGAACAAGTGACAAACCTTTGCATTAATGCACTGTTTTCATACCGTAAATTTTGTGCTACAGTGTCCTCATCTGGACAACTTATTCTTCCGGAGGCACTAAAGCTTTTGCCCTTGTACACACTTGCATTAACTAAGAGTACAGGGTTGCGAACTGAGGGAAAGATAGATGAGCGGTCATTTTGGATAAACTATGTATCCTCTATCTCTGCTCCATTAGCAATACCACTTGTGTATCCTAGGATGATGGCTATCCATGATCTTGACTCAAAGGAAGATGAAGACTCTGTTATTCCTCCCTTTCTTCCTCTTTCTAGTGAACACGTCAGTGATGATGGAATATATCTTCTTGAGAACGGTCATGATTGTTTGATATATGTTGGAGACTCTGTGAATCCAGACATTGTGCAGAAACTGTTTGGTGTTGCTACAGTTGACAAAGTTCCTACCCTGTTTGTATTGCAGCAGTATGACAATCCACTATCAAAGAAGTTAAATGAAGTGATAAATGAGATACGGCGGCAAAGATGTTGCTACCTCCGGTTCAAGCTCTGCAGGAAAGGAGATCCATCAGGAATGTTATTCTTCTCATATATGATAGAAGACAAGAGCGCAGGTGGCTTCTCCTATGTAGAATTTCTTATCCATGTTCATAGGCAAATTCAAAATAAAATGTCATCATAA
>Glyma10g42720.2 sequence type=predicted peptide gene model=Glyma10g42720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAPVPPGAPRPGSNTAQPPPPNYIPNIRGAPDALANNMHNLNLNRPPMTSNPVSRPPPFGQPPPFSSSGPSTGIPGSSPPFSRPGPPPGAMVRPVGPPTGPPFSTVPPNVAPGRPTGPPPGQPPSFVSRAPPSSPSFGASPVSGAPPPGGSPPVRSLGPPPPTLGGRPGPSPSPFTSPPLTTPPVVVPPTSASGNLMSNGPPVFSAGAMPGPQRFPVSSLPQPPVGPPPTMRAPPGPAVQPQPPYPMASQGTMQPPGSPFGAPSWQMQSQQVAPPPPVPGPSQAPRMFGMPPPLPNQSMTTTISPAVGQTGAPMAGPSKIDPNQIPRPTPGSSVILHETRQGNQATIPPPATSEYIARDTGNCSPRYMKCTINQIPFTADLLTTSGMQLAMLVQPLALPHPSEEPIQVVDFGESGPVRCSRCKAYINPFMKFIDQGRRFICNLCGFSDETPRDYHCNLGPDGRRRDADERPELCRGTVEFVATKEFMVREPMPAVYFFLIDVSMNAVQTGATAAACSAISRVIKDKDLPEGPRTLVGVATFDSTIHFYNLKRALQQPLMLIVPDVQDVYTPLQTDVIVPLSECRQHLELLLESIPTMFQNNRTSESAFGAAIKAAFLAMKDTGGKLLVFQSVLPSIGIGALSAREAEGRTNISAGEKEAHKLLQPADKAFKELAVEFAEYQVCVDVFVTTQTYVDIASISVIPRTTGGQVYYYYPFSALSDTAKLYNDLRWNITRPQGFEAVMRVRCSQGIQVQEYYGNFCKRIPTDVDLPGIDCDKTFMVTLKHDDKLQDGSECAIQCALLYTTVYGQRRIRVITLSLPVTSMLSNLFRAADLDTQFCCFLKQAASEIPSKPLPLVREQVTNLCINALFSYRKFCATVSSSGQLILPEALKLLPLYTLALTKSTGLRTEGKIDERSFWINYVSSISAPLAIPLVYPRMMAIHDLDSKEDEDSVIPPFLPLSSEHVSDDGIYLLENGHDCLIYVGDSVNPDIVQKLFGVATVDKVPTLFVLQQYDNPLSKKLNEVINEIRRQRCCYLRFKLCRKGDPSGMLFFSYMIEDKSAGGFSYVEFLIHVHRQIQNKMSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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