SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G75010 | AT | Annotation by Michelle Graham. TAIR10: GTP binding | chr1:28164994-28169941 REVERSE LENGTH=741 | SoyBase | E_val: 0 | ISS |
| GO:0009657 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid organization | SoyBase | N/A | ISS |
| GO:0010020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast fission | SoyBase | N/A | ISS |
| GO:0051258 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein polymerization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009707 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0035452 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extrinsic to plastid membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| GO:0043621 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein self-association | SoyBase | N/A | ISS |
| PTHR23084 | Panther | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED | JGI | ISS | |
| PTHR23084:SF59 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02493 | PFAM | MORN repeat | JGI | ISS | |
| UniRef100_B9S7B0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 1-phosphatidylinositol-4-phosphate 5-kinase, putative n=1 Tax=Ricinus communis RepID=B9S7B0_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LF30 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LF30_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g42691 not represented in the dataset |
Glyma10g42691 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g280500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42691.1 sequence type=CDS gene model=Glyma10g42691 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTTTCTGCATTTTCTAGCTTCAAAGCAGTTTCTGATGCTTCCTTGTTCCCATTTTCTTCGAATCAACTTTGGTGCCGATGCTCTCTTCCTCTTCGTCGCCGCGATTATGGTCTCTGTTGGAGTCCCAAGTCAAAACCGTGTTTTCGGATCAGAATGTGCTCGGAGAAAGCTTCGTCGTCGAACGGTTACGGCGGAATCGACTGCGGAGAAACAACGAACTCTGATTTCGTCGAAGTCATTGTCATTGGCTCTAGGAAGGACGCTGTTTTTGATTTCTGCTTGAACTCGCCGTTTCAATTACCGTCGCCGCGGTTTTGGAATATCCTCATGAAAGAATCAGAAGAGGTGCAATTACAGCAAAGATCAGTTGAAGAAGAATCTCACCCAAGACTTGTCAAAGCTCCATTATTTTTGAAGTCATGTTCAAAGACTATTGTCCTTGTGGCCAGTGCAGGATATGGCTTGTACCACACTGTTGCAGCAGATATTTTTGAAACTGTAAGGTCGAGGAATGGATTAACAGTTGCTATAGTTTTGAAGCCATTTAGATTTGAAGGGCTTAAACGGCAAGATGAGGTGAAAGCCTTGATGCAGAAACTTAAGGAGAACACACATTTACTTATTGAAATTGATATTGATGCACTGCTCGAGAAAGACTTATTGACTCTAGATGAGGCCATGAAGACCGCTAATGATGCAGTTTTGCTAGCTATTAAGGCTGTCTCTGTTCTAAAATCTGAGATGCACAAAAAATTTATAGATAGATTGAATGATGGCATGAAAGAGGCCAGCTCTTCAGAAATTAATAAAATATTGGAATCCTATAAAGAAGCAGGGATTGGATTTGGAGCTGCATATAACATCAAAGCTTCAATTTTGCAGTCTATATTTGATAGTCCTTTCCTGGGTGTTCGTTTGAAGGATCCAAATAGCCTAGTTATATGCACCCTTGCGTGTTCAGAACCCATCAATGATAGTGATATAGCAATCTTTCTGCATACTTTCCGTCAAACAACAAAATACACGAGGGATATTATAATATCAACAATACATGACCATGCTGTTGAGCCCAACCTATTCATAACAACAGTCCTTACACTTGGCTGTTTAAATGTGCAACGGTCTTCCCAGAATGGTGGTATACTGTCCAGACTTGCCCTGCATTTTCCTCTTATTTTTAGCTTTTGGGGAAGACATAATCAGCAACAAGTTGGCACTGGTAAACAGACTGAAGTATTTCCTCATGAAGTGATGAGTTCTGATGACATTGATGAGAGGACAAATAGGATTACTTCTGACAACATAGATAACAATCTTGACAAATACTATGAAGAGCCAGCATTGAGAAACAACAGCTCAAAGTTGCCTACTTCAAGGGATTCTGGAAAAAATGGAGAAGATTTATCTGACACCACGTCCAACTATAACATCCTTTATGACTCTATTACCGAAGGAGTTGCATTAGGTGACTCTGCTTTTCAAAGGGAACAACTTGAGAACTGGAATCTAGGTCCTGGATTTGAGGTGGCAAAGGAGTGGGCCCAAGAAAAAGCAGCTGATGCTACACCCGCTGTTGATAACCTAAGCATCTTCCACCTTCCTGTTGGTGTGAGGCATTCAGAAGATTTGAAAGACTGTTTGGAAATCTCATTTCTGACAAAACAGCTTGAGCCAGATACTGATAACGATGTGAAAACACAAACATTAAATGGAGGTATGTCTCCTTGGAGTGCAGCAACTGATGCAAGTTTGGAAGCAGTGATGGAATTTGCATCTTCACTTTTGAAAGGAAAGAATGCTAATAAATCAAAGAAAGACGGAGTTCTATCTGTTCGTGCTGCGTCTATGTTGGAGGCAGAACGTGATTTGTCAAAAAAGTGGAGTCCGGTCGTGGAAATGCAATATAGGGGAGGAAGATACAAGGGACGATGCCAAGGAGGTCTACCTGAAGGGAAGGGGCGTCTTGTTCTCAGAGATGGCAGTATATATGACGGTTTATGGCGCTATGGTAAGAGATCAGGTCCAGGTTCATTCTACTTCAAAAATGGGGATATGTTTCAAGGATCATGGAGGGACGATGTCATACACGGCAAGGGTTGGTTTTACTTTCGCACTGGTGATCGGTGGTTTGCAAACTTTTGGAAGGGAAAGGCTAATGGTGAGGGGCGGTTCTACACAAAGTCCGGTGATGCCTTCTTTGGCAATTTCAAAGATGGATGGCGACATGGCCAGTTTCTTTGTATTAATGCGAATGGGACAAGGTACACTGAAATTTGGGAAAATGGTGTTCTTGTAGATGGCAAGTATTTAGACAGATGA
>Glyma10g42691.1 sequence type=predicted peptide gene model=Glyma10g42691 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELSAFSSFKAVSDASLFPFSSNQLWCRCSLPLRRRDYGLCWSPKSKPCFRIRMCSEKASSSNGYGGIDCGETTNSDFVEVIVIGSRKDAVFDFCLNSPFQLPSPRFWNILMKESEEVQLQQRSVEEESHPRLVKAPLFLKSCSKTIVLVASAGYGLYHTVAADIFETVRSRNGLTVAIVLKPFRFEGLKRQDEVKALMQKLKENTHLLIEIDIDALLEKDLLTLDEAMKTANDAVLLAIKAVSVLKSEMHKKFIDRLNDGMKEASSSEINKILESYKEAGIGFGAAYNIKASILQSIFDSPFLGVRLKDPNSLVICTLACSEPINDSDIAIFLHTFRQTTKYTRDIIISTIHDHAVEPNLFITTVLTLGCLNVQRSSQNGGILSRLALHFPLIFSFWGRHNQQQVGTGKQTEVFPHEVMSSDDIDERTNRITSDNIDNNLDKYYEEPALRNNSSKLPTSRDSGKNGEDLSDTTSNYNILYDSITEGVALGDSAFQREQLENWNLGPGFEVAKEWAQEKAADATPAVDNLSIFHLPVGVRHSEDLKDCLEISFLTKQLEPDTDNDVKTQTLNGGMSPWSAATDASLEAVMEFASSLLKGKNANKSKKDGVLSVRAASMLEAERDLSKKWSPVVEMQYRGGRYKGRCQGGLPEGKGRLVLRDGSIYDGLWRYGKRSGPGSFYFKNGDMFQGSWRDDVIHGKGWFYFRTGDRWFANFWKGKANGEGRFYTKSGDAFFGNFKDGWRHGQFLCINANGTRYTEIWENGVLVDGKYLDR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
