Glyma10g42630 - SoyBase

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Report for Sequence Feature Glyma10g42630

Feature Type:	gene_model
Chromosome:	Gm10
Start:	49524250
stop:	49528395
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g42630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54250	AT	Annotation by Michelle Graham. TAIR10: GHMP kinase family protein \| chr3:20082468-20084688 REVERSE LENGTH=419	SoyBase	E_val: 0	ISS
GO:0008299	GO-bp	Annotation by Michelle Graham. GO Biological Process: isoprenoid biosynthetic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0004163	GO-mf	Annotation by Michelle Graham. GO Molecular Function: diphosphomevalonate decarboxylase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG2833	KOG	Mevalonate pyrophosphate decarboxylase	JGI		ISS
PTHR10977	Panther	DIPHOSPHOMEVALONATE DECARBOXYLASE	JGI		ISS
PTHR10977:SF2	Panther	DIPHOSPHOMEVALONATE DECARBOXYLASE	JGI		ISS
PF00288	PFAM	GHMP kinases N terminal domain	JGI		ISS
UniRef100_B9S5A3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Diphosphomevalonate decarboxylase, putative n=1 Tax=Ricinus communis RepID=B9S5A3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LF24	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LF24_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g42630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g42630 not represented in the dataset	Glyma10g42630 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g42630

Paralog	Evidence	Comments
Glyma20g24400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g42630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g279800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g42630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g42630

Limit To All Plant Sequences

>Glyma10g42630.2   sequence type=transcript   gene model=Glyma10g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGTGAAGTTGACTTACCTAAAATTCATCTTATTTAATATTATTAATCAATATTTTATTCGTCGATCCCAGTAAATCGAATCCAAATCTCTTAAATCAATATTTGCACCCAAATAAAGTTTTGAAATTGAGATAATGGCGAGTGAGTCGCAAAACTGGGTATTCATGGTGACTGCACAGACCCCAACCAACATTGCCGTTATCAAGTATTGGGGTAAAAGAGACGAAACCTTGATCTTACCGGTTAACGATAGTATCAGTCTCACTCTCGATCCCTCCCACCTCTGCACCACCACCACTGTTGCCGTCAGTTCCGCTTTCCACCAAGATCGCATGTGGCTCAATGCCAAGGAGATTTCTCTTTCTGGGGGCAGGTTCCAGAGCTGTTTAAGGGAGATCCGTGCTCGTGCTTGTGATGTTGAGGATGAAAATAAGGGTATAAAGATCACAAAGGAGGATTGGGCCAAATTGCACCTACACATTGCTTCGTACAACAACTTCCCTACTGCAGCAGGACTGGCTTCATCAGCCGCGGGTTTTGCCTGCCTTGCTTATGCCCTTGGGAAGCTAATGGATGTCAAAGAAGATGAAAGCCAGCTATCTGCTATCGCAAGGCAAGGATCAGGTAGTGCTTGTCGCAGCTTATTTGGGGGATTTGTTAAGTGGATAATGGGAAAAGAGGATAATGGCAGTGATAGTCTTGCAGTTCAACTTGCTGATGAAAAGCACTGGGATGATCTTGTTATTGTTATTGCCGTGGTTAGCTCACGGCAGAAGGAAACAAGTAGCACCTCTGGAATGTGTGAGAGTGTTGAAACAAGTTTGCTTTTACAACACAGGGCAAAGTTTCATGCAGTCTGCCTGGATACATCCCCCCCTATATTTTACATGAATGATACATCCCACAGAATAATCAGCATTGCTGAAAAGTGGAACCGTTCAGAAGAAGCTCCCCAGGTAGCTTATACATTTGATGCAGGGCCAAATGCTGTTCTAATTGCACGTAATAGGAAAGCTGCTACCTCTTTGATTCAGAGGTTGCTTTACTACTTCCCTCCAAATTCAGATGACCTCAGCAGTTACATTATTGGGGACAAGTCAATTGCAAAAGATGCGGGGATCAATGGAATACAGGACGTAGAAGCTTTGCCACCTCCTCCAGAAATCAAAGATAATATTCCACCCCAAAAATACAAGGGGGATGTCAGTTATTTCATATGTACCAGACCTGGAAGGGGACCTGTTTTGCTTTCTGATAGCAGTCAAGCACTTCTGAACGGTGAAACTGGGCTTCCCAAGTAAGTTCATGGGAAACATTCTCGTGGTTGATCTATTCTTCGTTGGGCTTCACTAGCAGGCTTTTTGAGCCCAAAATATTTTGATTGGAGGACCCTTTCAAGGAAGCCCGTGTGCTACCCATGGCATGATGATTCGTTCCTTCCTAGTTCGCAGTATGTGTTCGTTTAAGTATCTGTAATTTTTGTTTCAGACCTAGTTAGGCTATTTTGTTGGAGAAAAATAAGTCTCGCTTCTTTTTTGAACAATTCATTTGAGCTTGCAAGTTAAACTTGTCAGTTTTTTATGTGAACAATTGTCCCTACTTTGCTATATTTTGATTAAGTGTTCCATTTTATTCTTATTGTACTTCGGCTTATAAAGATGCTCATTCACCTTATGGACCCTCAACCGTAGTAACATTTTG

>Glyma10g42630.3   sequence type=transcript   gene model=Glyma10g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGTGAAGTTGACTTACCTAAAATTCATCTTATTTAATATTATTAATCAATATTTTATTCGTCGATCCCAGTAAATCGAATCCAAATCTCTTAAATCAATATTTGCACCCAAATAAAGTTTTGAAATTGAGATAATGGCGAGTGAGTCGCAAAACTGGGTATTCATGGTGACTGCACAGACCCCAACCAACATTGCCGTTATCAAGTATTGGGGTAAAAGAGACGAAACCTTGATCTTACCGGTTAACGATAGTATCAGTCTCACTCTCGATCCCTCCCACCTCTGCACCACCACCACTGTTGCCGTCAGTTCCGCTTTCCACCAAGATCGCATGTGGCTCAATGCCAAGTGTAGGAGATTTCTCTTTCTGGGGGCAGGTTCCAGAGCTGTTTAAGGGAGATCCGTGCTCGTGCTTGTGATGTTGAGGATGAAAATAAGGGTATAAAGATCACAAAGGAGGATTGGGCCAAATTGCACCTACACATTGCTTCGTACAACAACTTCCCTACTGCAGCAGGACTGGCTTCATCAGCCGCGGGTTTTGCCTGCCTTGCTTATGCCCTTGGGAAGCTAATGGATGTCAAAGAAGATGAAAGCCAGCTATCTGCTATCGCAAGGCAAGGATCAGGTAGTGCTTGTCGCAGCTTATTTGGGGGATTTGTTAAGTGGATAATGGGAAAAGAGGATAATGGCAGTGATAGTCTTGCAGTTCAACTTGCTGATGAAAAGCACTGGGATGATCTTGTTATTGTTATTGCCGTGGTTAGCTCACGGCAGAAGGAAACAAGTAGCACCTCTGGAATGTGTGAGAGTGTTGAAACAAGTTTGCTTTTACAACACAGGGCAAAGGAAATTGTGCCAAAGCGGATACTGCAAATGGAAGAAGCCATTAAAAATCGTGATTTTGCATCTTTTTCGCAATTGACCTGTGCTGATAGCAACCAGTTTCATGCAGTCTGCCTGGATACATCCCCCCCTATATTTTACATGAATGATACATCCCACAGAATAATCAGCATTGCTGAAAAGTGGAACCGTTCAGAAGAAGCTCCCCAGGTAGCTTATACATTTGATGCAGGGCCAAATGCTGTTCTAATTGCACGTAATAGGAAAGCTGCTACCTCTTTGATTCAGAGGTTGCTTTACTACTTCCCTCCAAATTCAGATGACCTCAGCAGTTACATTATTGGGGACAAGTCAATTGCAAAAGATGCGGGGATCAATGGAATACAGGACGTAGAAGCTTTGCCACCTCCTCCAGAAATCAAAGATAATATTCCACCCCAAAAATACAAGGGGGATGTCAGTTATTTCATATGTACCAGACCTGGAAGGGGACCTGTTTTGCTTTCTGATAGCAGTCAAGCACTTCTGAACGGTGAAACTGGGCTTCCCAAGTAAGTTCATGGGAAACATTCTCGTGGTTGATCTATTCTTCGTTGGGCTTCACTAGCAGGCTTTTTGAGCCCAAAATATTTTGATTGGAGGACCCTTTCAAGGAAGCCCGTGTGCTACCCATGGCATGATGATTCGTTCCTTCCTAGTTCGCAGTATGTGTTCGTTTAAGTATCTGTAATTTTTGTTTCAGACCTAGTTAGGCTATTTTGTTGGAGAAAAATAAGTCTCGCTTCTTTTTTGAACAATTCATTTGAGCTTGCAAGTTAAACTTGTCAGTTTTTTATGTGAACAATTGTCCCTACTTTGCTATATTTTGATTAAGTGTTCCATTTTATTCTTATTGTACTTCGGCTTATAAAGATGCTCATTCACCTTATGGACCCTCAACCGTAGTAACATTTTG

Coding sequences of Glyma10g42630

Limit To All Plant Sequences

>Glyma10g42630.1   sequence type=CDS   gene model=Glyma10g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTGAGTCGCAAAACTGGGTATTCATGGTGACTGCACAGACCCCAACCAACATTGCCGTTATCAAGTATTGGGGTAAAAGAGACGAAACCTTGATCTTACCGGTTAACGATAGTATCAGTCTCACTCTCGATCCCTCCCACCTCTGCACCACCACCACTGTTGCCGTCAGTTCCGCTTTCCACCAAGATCGCATGTGGCTCAATGCCAAGGAGATTTCTCTTTCTGGGGGCAGGTTCCAGAGCTGTTTAAGGGAGATCCGTGCTCGTGCTTGTGATGTTGAGGATGAAAATAAGGGTATAAAGATCACAAAGGAGGATTGGGCCAAATTGCACCTACACATTGCTTCGTACAACAACTTCCCTACTGCAGCAGGACTGGCTTCATCAGCCGCGGGTTTTGCCTGCCTTGCTTATGCCCTTGGGAAGCTAATGGATGTCAAAGAAGATGAAAGCCAGCTATCTGCTATCGCAAGGCAAGGATCAGGTAGTGCTTGTCGCAGCTTATTTGGGGGATTTGTTAAGTGGATAATGGGAAAAGAGGATAATGGCAGTGATAGTCTTGCAGTTCAACTTGCTGATGAAAAGCACTGGGATGATCTTGTTATTGTTATTGCCGTGGTTAGCTCACGGCAGAAGGAAACAAGTAGCACCTCTGGAATGTGTGAGAGTGTTGAAACAAGTTTGCTTTTACAACACAGGGCAAAGGAAATTGTGCCAAAGCGGATACTGCAAATGGAAGAAGCCATTAAAAATCGTGATTTTGCATCTTTTTCGCAATTGACCTGTGCTGATAGCAACCAGTTTCATGCAGTCTGCCTGGATACATCCCCCCCTATATTTTACATGAATGATACATCCCACAGAATAATCAGCATTGCTGAAAAGTGGAACCGTTCAGAAGAAGCTCCCCAGGTAGCTTATACATTTGATGCAGGGCCAAATGCTGTTCTAATTGCACGTAATAGGAAAGCTGCTACCTCTTTGATTCAGAGGTTGCTTTACTACTTCCCTCCAAATTCAGATGACCTCAGCAGTTACATTATTGGGGACAAGTCAATTGCAAAAGATGCGGGGATCAATGGAATACAGGACGTAGAAGCTTTGCCACCTCCTCCAGAAATCAAAGATAATATTCCACCCCAAAAATACAAGGGGGATGTCAGTTATTTCATATGTACCAGACCTGGAAGGGGACCTGTTTTGCTTTCTGATAGCAGTCAAGCACTTCTGAACGGTGAAACTGGGCTTCCCAAGTAA

>Glyma10g42630.2   sequence type=CDS   gene model=Glyma10g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGTGAGTCGCAAAACTGGGTATTCATGGTGACTGCACAGACCCCAACCAACATTGCCGTTATCAAGTATTGGGGTAAAAGAGACGAAACCTTGATCTTACCGGTTAACGATAGTATCAGTCTCACTCTCGATCCCTCCCACCTCTGCACCACCACCACTGTTGCCGTCAGTTCCGCTTTCCACCAAGATCGCATGTGGCTCAATGCCAAGGAGATTTCTCTTTCTGGGGGCAGGTTCCAGAGCTGTTTAAGGGAGATCCGTGCTCGTGCTTGTGATGTTGAGGATGAAAATAAGGGTATAAAGATCACAAAGGAGGATTGGGCCAAATTGCACCTACACATTGCTTCGTACAACAACTTCCCTACTGCAGCAGGACTGGCTTCATCAGCCGCGGGTTTTGCCTGCCTTGCTTATGCCCTTGGGAAGCTAATGGATGTCAAAGAAGATGAAAGCCAGCTATCTGCTATCGCAAGGCAAGGATCAGGTAGTGCTTGTCGCAGCTTATTTGGGGGATTTGTTAAGTGGATAATGGGAAAAGAGGATAATGGCAGTGATAGTCTTGCAGTTCAACTTGCTGATGAAAAGCACTGGGATGATCTTGTTATTGTTATTGCCGTGGTTAGCTCACGGCAGAAGGAAACAAGTAGCACCTCTGGAATGTGTGAGAGTGTTGAAACAAGTTTGCTTTTACAACACAGGGCAAAGTTTCATGCAGTCTGCCTGGATACATCCCCCCCTATATTTTACATGAATGATACATCCCACAGAATAATCAGCATTGCTGAAAAGTGGAACCGTTCAGAAGAAGCTCCCCAGGTAGCTTATACATTTGATGCAGGGCCAAATGCTGTTCTAATTGCACGTAATAGGAAAGCTGCTACCTCTTTGATTCAGAGGTTGCTTTACTACTTCCCTCCAAATTCAGATGACCTCAGCAGTTACATTATTGGGGACAAGTCAATTGCAAAAGATGCGGGGATCAATGGAATACAGGACGTAGAAGCTTTGCCACCTCCTCCAGAAATCAAAGATAATATTCCACCCCAAAAATACAAGGGGGATGTCAGTTATTTCATATGTACCAGACCTGGAAGGGGACCTGTTTTGCTTTCTGATAGCAGTCAAGCACTTCTGAACGGTGAAACTGGGCTTCCCAAGTAA

>Glyma10g42630.3   sequence type=CDS   gene model=Glyma10g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTCAAAGAAGATGAAAGCCAGCTATCTGCTATCGCAAGGCAAGGATCAGGTAGTGCTTGTCGCAGCTTATTTGGGGGATTTGTTAAGTGGATAATGGGAAAAGAGGATAATGGCAGTGATAGTCTTGCAGTTCAACTTGCTGATGAAAAGCACTGGGATGATCTTGTTATTGTTATTGCCGTGGTTAGCTCACGGCAGAAGGAAACAAGTAGCACCTCTGGAATGTGTGAGAGTGTTGAAACAAGTTTGCTTTTACAACACAGGGCAAAGGAAATTGTGCCAAAGCGGATACTGCAAATGGAAGAAGCCATTAAAAATCGTGATTTTGCATCTTTTTCGCAATTGACCTGTGCTGATAGCAACCAGTTTCATGCAGTCTGCCTGGATACATCCCCCCCTATATTTTACATGAATGATACATCCCACAGAATAATCAGCATTGCTGAAAAGTGGAACCGTTCAGAAGAAGCTCCCCAGGTAGCTTATACATTTGATGCAGGGCCAAATGCTGTTCTAATTGCACGTAATAGGAAAGCTGCTACCTCTTTGATTCAGAGGTTGCTTTACTACTTCCCTCCAAATTCAGATGACCTCAGCAGTTACATTATTGGGGACAAGTCAATTGCAAAAGATGCGGGGATCAATGGAATACAGGACGTAGAAGCTTTGCCACCTCCTCCAGAAATCAAAGATAATATTCCACCCCAAAAATACAAGGGGGATGTCAGTTATTTCATATGTACCAGACCTGGAAGGGGACCTGTTTTGCTTTCTGATAGCAGTCAAGCACTTCTGAACGGTGAAACTGGGCTTCCCAAGTAA

Predicted protein sequences of Glyma10g42630

Limit To All Plant Sequences

>Glyma10g42630.1   sequence type=predicted peptide   gene model=Glyma10g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASESQNWVFMVTAQTPTNIAVIKYWGKRDETLILPVNDSISLTLDPSHLCTTTTVAVSSAFHQDRMWLNAKEISLSGGRFQSCLREIRARACDVEDENKGIKITKEDWAKLHLHIASYNNFPTAAGLASSAAGFACLAYALGKLMDVKEDESQLSAIARQGSGSACRSLFGGFVKWIMGKEDNGSDSLAVQLADEKHWDDLVIVIAVVSSRQKETSSTSGMCESVETSLLLQHRAKEIVPKRILQMEEAIKNRDFASFSQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISIAEKWNRSEEAPQVAYTFDAGPNAVLIARNRKAATSLIQRLLYYFPPNSDDLSSYIIGDKSIAKDAGINGIQDVEALPPPPEIKDNIPPQKYKGDVSYFICTRPGRGPVLLSDSSQALLNGETGLPK*

>Glyma10g42630.2   sequence type=predicted peptide   gene model=Glyma10g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASESQNWVFMVTAQTPTNIAVIKYWGKRDETLILPVNDSISLTLDPSHLCTTTTVAVSSAFHQDRMWLNAKEISLSGGRFQSCLREIRARACDVEDENKGIKITKEDWAKLHLHIASYNNFPTAAGLASSAAGFACLAYALGKLMDVKEDESQLSAIARQGSGSACRSLFGGFVKWIMGKEDNGSDSLAVQLADEKHWDDLVIVIAVVSSRQKETSSTSGMCESVETSLLLQHRAKFHAVCLDTSPPIFYMNDTSHRIISIAEKWNRSEEAPQVAYTFDAGPNAVLIARNRKAATSLIQRLLYYFPPNSDDLSSYIIGDKSIAKDAGINGIQDVEALPPPPEIKDNIPPQKYKGDVSYFICTRPGRGPVLLSDSSQALLNGETGLPK*

>Glyma10g42630.3   sequence type=predicted peptide   gene model=Glyma10g42630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVKEDESQLSAIARQGSGSACRSLFGGFVKWIMGKEDNGSDSLAVQLADEKHWDDLVIVIAVVSSRQKETSSTSGMCESVETSLLLQHRAKEIVPKRILQMEEAIKNRDFASFSQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISIAEKWNRSEEAPQVAYTFDAGPNAVLIARNRKAATSLIQRLLYYFPPNSDDLSSYIIGDKSIAKDAGINGIQDVEALPPPPEIKDNIPPQKYKGDVSYFICTRPGRGPVLLSDSSQALLNGETGLPK*

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