SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08415 | AT | Annotation by Michelle Graham. TAIR10: Radical SAM superfamily protein | chr5:2710983-2713101 REVERSE LENGTH=394 | SoyBase | E_val: 0 | ISS |
| GO:0009107 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipoate biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0016992 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipoate synthase activity | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| GO:0051539 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 4 iron, 4 sulfur cluster binding | SoyBase | N/A | ISS |
| KOG2672 | KOG | Lipoate synthase | JGI | ISS | |
| PTHR10949 | Panther | LIPOIC ACID SYNTHETASE | JGI | ISS | |
| PTHR10949:SF0 | Panther | LIPOYL SYNTHASE | JGI | ISS | |
| PF04055 | PFAM | Radical SAM superfamily | JGI | ISS | |
| UniRef100_B9RX57 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Lipoyl synthase, chloroplastic n=1 Tax=Ricinus communis RepID=LISC_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D0B9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D0B9 related cluster n=1 Tax=unknown RepID=UPI000233D0B9 | SoyBase | E_val: 0 | ISS |
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Glyma10g42600 not represented in the dataset |
Glyma10g42600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g24430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g279500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42600.2 sequence type=CDS gene model=Glyma10g42600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTCGTCAATCTCTTTACAACCCTCCTTCCATCCCCTTCTCAACCCCTTCCATGAAACGCCACCGTTTCTCCCCTCCAAGTTGGAGAATTCGATGCGACGCGTCGTCGGTGTCGGTGGAGCAGAAGGTTGTTGGGCCACACACGGGTAGAGACCCAAACGTGAAGAAGCCAGAGTGGTTGAGGCAGAAAGCTCCTCAGGGTGAAAGGTTCCAAGAGATTAAGGAATCCTTGTCCCATTTGAAGCTCAACACTGTCTGTGAGGAGGCACAATGCCCCAACATAGGAGAGTGTTGGAATGGAGGCGGAGATGGCATTGCAACTGCGACAATCATGGTTCTTGGGGATACTTGCACGCGTGGGTGTAGGTTTTGTGCTGTGAAGACCAGCAGAAACCCTCCACCTCCTGATCCTATGGAACCGATAAATACTGCCAAGGCCATTGCAAGTTGGGGTGCCCAAGATGTTGTACCTTTCAAATTGCACATCCGCACCTTAGGCTCCAATGAGTTCTTACCTGAAAGTTTTCAGGGATGTGGATATATTGTCCTAACAAGTGTGGATCGTGATGATCTGCCTGATGGAGGAAGTGGCCATTTTGCTCAGACTGTCAAAGCTATGAAGAATCTCAAACCTGAGATCATGGTTGAGTGTTTAACTTCTGATTTTCGGGGTGACCTGAAGGCTGTAGAAATTCTGGTTCACTCAGGTTTAGATGTCTTTGCTCACAACATTGAGACAGTCAAACGCCTCCAAAGAATTGTTAGAGATCCGAGGGCAGGGTATGAGCAAAGCCTGTCAGTTCTAAAACATGCAAAACATAGCAAGGAGGGTTTGATAACAAAAACTTCTATAATGCTGGGCCTTGGAGAAACTGATGATGAGGTGAAGGAAGCAATGGCTGATTTAAGGGCCATTGATGTTGATATTGTGACATTTGGTCAATATTTGCAGCCAACTCCCTTGCACTTAACTGTCAAAGAGTATGTTACTCCTGAGAAGTTTGCTTTCTGGAAAGAATACGGGGAATCTATTGGTTTTTGTTATGTAGCTAGTGGTCCACTGGTGAGATCATCGTACAGAGCTGGGGAGCTGTTTGTCAAGACAATGGTACGAGAAAAGGCCAAGAATGCTGGTGACTCGTTGTTATGA
>Glyma10g42600.2 sequence type=predicted peptide gene model=Glyma10g42600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIRQSLYNPPSIPFSTPSMKRHRFSPPSWRIRCDASSVSVEQKVVGPHTGRDPNVKKPEWLRQKAPQGERFQEIKESLSHLKLNTVCEEAQCPNIGECWNGGGDGIATATIMVLGDTCTRGCRFCAVKTSRNPPPPDPMEPINTAKAIASWGAQDVVPFKLHIRTLGSNEFLPESFQGCGYIVLTSVDRDDLPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVEILVHSGLDVFAHNIETVKRLQRIVRDPRAGYEQSLSVLKHAKHSKEGLITKTSIMLGLGETDDEVKEAMADLRAIDVDIVTFGQYLQPTPLHLTVKEYVTPEKFAFWKEYGESIGFCYVASGPLVRSSYRAGELFVKTMVREKAKNAGDSLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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