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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04740 | AT | Annotation by Michelle Graham. TAIR10: ACT domain-containing protein | chr5:1368713-1371391 REVERSE LENGTH=301 | SoyBase | E_val: 2.00E-125 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0019408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dolichol biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016597 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid binding | SoyBase | N/A | ISS |
| PF01842 | PFAM | ACT domain | JGI | ISS | |
| UniRef100_B9S5B3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S5B3_RICCO | SoyBase | E_val: 1.00E-124 | ISS |
| UniRef100_I1LF19 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LF19_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g42580 not represented in the dataset |
Glyma10g42580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g24450 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g279300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42580.4 sequence type=transcript gene model=Glyma10g42580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGAGACAGACAAATCCATGTAATTGAATAGACAAAGCACTTTCGGTTTCTTATTATTTTGATTTTCATTACATCACGTAACAATAATAATACAGCCAAGCACGCACGCACGCACCCACAGGCACAAGTCTCTCCAACTCAACTTCTTCCACTCTCACTAATGGCTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTCCACGGTGTTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTCTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACTTTCTAAAAGCTTCTGCTTATGATTTGAATGCAGTTGGTTCTGCTTCACTGCAATCTGGTGACAATCCTGATAGTGTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGGATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAAAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGACCCAAGAGGAGCTTGCTATATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAATCGGCTGAGATTGATACAGAGGTATCTTCCTTTTTGTCTTTGTCCGCCTCTGTTTGCCTCTACTTGATTCATTTACCCTAAGTAACTTTACCCTCTTTTCTCTCAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGGCTCAGGTTTTGGTGAATTGTCTGCGTTACTACCTGCGAACGCCAGAGACAGATATTGACAGTTACTGAAGAAACCACCCTTGTGAAATAAGCCAATACAATGGTTCTTTCTTATACCAATTCCCCAGTTAGCTCGATATCACCTGCGAATCATATGGTAGCTTTACTGCTACCACATTATGGAATGAGTTATGAGTACGTGTTGCCTATGGAATGAATGAATACCTGTAACTAACTATGGAATGAATACATGTTGCCTATGGCATGGAATCTAGGATACCAGAAACTCACTGATCATCCGTCAAATCTTATATGAAAGCTAAAAAATCGAAAATGAATTTTGCCTCATTTCCTAAATGGTTTATGTGATTGTTATGATTTTATTTTTGTTGTGAAACACAAAC >Glyma10g42580.5 sequence type=transcript gene model=Glyma10g42580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGAGACAGACAAATCCATGTAATTGAATAGACAAAGCACTTTCGGTTTCTTATTATTTTGATTTTCATTACATCACGTAACAATAATAATACAGCCAAGCACGCACGCACGCACCCACAGGCACAAGTCTCTCCAACTCAACTTCTTCCACTCTCACTAATGGCTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTCCACGGTGTTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTCTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACTTTCTAAAAGCTTCTGCTTATGATTTGAATGCAGTTGGTTCTGCTTCACTGCAATCTGGTGACAATCCTGATAGTGTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGGATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAAAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGACCCAAGAGGAGCTTGCTATATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAATCGGCTGAGATTGATACAGAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGGCTCAGGTTTTGGTGAATTGTCTGCGTTACTACCTGCGAACGCCAGAGACAGATATTGACAGTTACTGAAGAAACCACCCTTGTGAAATAAGCCAATACAATGGTTCTTTCTTATACCAATTCCCCAGTTAGCTCGATATCACCTGCGAATCATATGGTAGCTTTACTGCTACCACATTATGGAATGAGTTATGAGTACGTGTTGCCTATGGAATGAATGAATACCTGTAACTAACTATGGAATGAATACATGTTGCCTATGGCATGGAATCTAGGATACCAGAAACTCACTGATCATCCGTCAAATCTTATATGAAAGCTAAAAAATCGAAAATGAATTTTGCCTCATTTCCTAAATGGTTTATGTGATTGTTATGATTTTATTTTTGTTGTGAAACACAAAC
>Glyma10g42580.1 sequence type=CDS gene model=Glyma10g42580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTCCACGGTGTTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTCTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACTTTCTAAAAGCTTCTGCTTATGATTTGAATGCAGTTGGTTCTGCTTCACTGCAATCTGGTGACAATCCTGATAGTGTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGGATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAAAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGACCCAAGAGGAGCTTGCTATATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAATCGGCTGAGATTGATACAGAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGGCTCAGGTAACCTTTGTGTTCAAAGAAATGGAGAAATTTTTCCTAGATGCTGGAGTAGAAGTAATTTAG >Glyma10g42580.4 sequence type=CDS gene model=Glyma10g42580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTCCACGGTGTTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTCTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACTTTCTAAAAGCTTCTGCTTATGATTTGAATGCAGTTGGTTCTGCTTCACTGCAATCTGGTGACAATCCTGATAGTGTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGGATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAAAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGACCCAAGAGGAGCTTGCTATATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAATCGGCTGAGATTGATACAGAGGTATCTTCCTTTTTGTCTTTGTCCGCCTCTGTTTGCCTCTACTTGATTCATTTACCCTAA >Glyma10g42580.5 sequence type=CDS gene model=Glyma10g42580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTCACCAATGCTTTCCTCGCTCCTTCCTTCGCCGTCCACGGTGTTGGTAGGGTTTCCGATCCGCGCTCCATTCCTCTCTTCTCTCTTCCCTCCGACGCCTTCTTCCGCTCCCCAACCTCCCTCTCCAGGGACAAGAACTTTCTAAAAGCTTCTGCTTATGATTTGAATGCAGTTGGTTCTGCTTCACTGCAATCTGGTGACAATCCTGATAGTGTTCCTATGCCAATAGTTCTAATAGATCAAGAATCAGATTCTGAAGCAACAATTGTGCAGCTTAGCTTTGGGGATCGCCTTGGAGCTCTTCTTGACACGATGAAAGCATTAAAAGATTTGGGATTGGATGTTTCAAAGGGAACTGTCTCCACAGAGGGATTAGTCAAGCAAACAAAATTTTTCATTACACAATCAGACACTGGGCGCAAAGTTGAAGATCCTGATATGTTAGAGAGAATTCGACTTACCATTATTAACAATCTGTTGAAATATCATCCTGAGTCCAGTGAACTACTAGCGATGGGTGAAGTGTTTGGCATAAAGGCTCCAAAGAAAAAGCTTGATGATGATATCAAAACTCGTATACAAGTTAAGGAAGATGGACCCAAGAGGAGCTTGCTATATATAGAGACAGCAGATAGGCCGGGATTGCTGGTTGAAATCATCAAAGTCATTGCAGATGTAAACATTGATGTTGAATCGGCTGAGATTGATACAGAGGGTTTGGTTGCTAAGGATACATTTCATGTTAGTTACGGCGGGGCTGCATTGAACAGTTCAATGGCTCAGGTTTTGGTGAATTGTCTGCGTTACTACCTGCGAACGCCAGAGACAGATATTGACAGTTACTGA
>Glyma10g42580.1 sequence type=predicted peptide gene model=Glyma10g42580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALTNAFLAPSFAVHGVGRVSDPRSIPLFSLPSDAFFRSPTSLSRDKNFLKASAYDLNAVGSASLQSGDNPDSVPMPIVLIDQESDSEATIVQLSFGDRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMAQVTFVFKEMEKFFLDAGVEVI* >Glyma10g42580.4 sequence type=predicted peptide gene model=Glyma10g42580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALTNAFLAPSFAVHGVGRVSDPRSIPLFSLPSDAFFRSPTSLSRDKNFLKASAYDLNAVGSASLQSGDNPDSVPMPIVLIDQESDSEATIVQLSFGDRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEVSSFLSLSASVCLYLIHLP* >Glyma10g42580.5 sequence type=predicted peptide gene model=Glyma10g42580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALTNAFLAPSFAVHGVGRVSDPRSIPLFSLPSDAFFRSPTSLSRDKNFLKASAYDLNAVGSASLQSGDNPDSVPMPIVLIDQESDSEATIVQLSFGDRLGALLDTMKALKDLGLDVSKGTVSTEGLVKQTKFFITQSDTGRKVEDPDMLERIRLTIINNLLKYHPESSELLAMGEVFGIKAPKKKLDDDIKTRIQVKEDGPKRSLLYIETADRPGLLVEIIKVIADVNIDVESAEIDTEGLVAKDTFHVSYGGAALNSSMAQVLVNCLRYYLRTPETDIDSY*
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