SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60740 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:22447385-22453325 REVERSE LENGTH=1254 | SoyBase | E_val: 0 | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0007017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based process | SoyBase | N/A | ISS |
| GO:0007020 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule nucleation | SoyBase | N/A | ISS |
| GO:0007021 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tubulin complex assembly | SoyBase | N/A | ISS |
| GO:0007267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell-cell signaling | SoyBase | N/A | ISS |
| GO:0009616 | GO-bp | Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing | SoyBase | N/A | ISS |
| GO:0009637 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to blue light | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010050 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative phase change | SoyBase | N/A | ISS |
| GO:0010155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of proton transport | SoyBase | N/A | ISS |
| GO:0010267 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0051225 | GO-bp | Annotation by Michelle Graham. GO Biological Process: spindle assembly | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0015631 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tubulin binding | SoyBase | N/A | ISS |
| KOG1943 | KOG | Beta-tubulin folding cofactor D | JGI | ISS | |
| PTHR12658 | Panther | BETA-TUBULIN COFACTOR D | JGI | ISS | |
| PF12612 | PFAM | Tubulin folding cofactor D C terminal | JGI | ISS | |
| UniRef100_B9RD93 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-tubulin cofactor d, putative n=1 Tax=Ricinus communis RepID=B9RD93_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LF15 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LF15_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g42560 not represented in the dataset |
Glyma10g42560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g24470 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g279100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42560.1 sequence type=CDS gene model=Glyma10g42560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGGTCACCAGGTGGCAGCTTCTGAGGCAACGGTGGCCAGCCACCGACATAGAGACCCTCATGGACTTGGGTGGGAAGCTACCGTCGGTGGTTTTGCCGAGAAGTATTGGAAGGTTGATGGATGGCCCTTAATTTGGGTGGGTATTCAACTTAATGCTTTTGCGCTTGTTTTTCCGGGCCATCAGCTTCTTCAGTCAGAACTGGAACTTGAGAATCCGACGATTAGTGTTGTACTGTTCTCTTGGAAACTTGCATTTCAGATCCCGCCAAAATCCCTTTGGACTCCAGAGGTGACTATGGAAGCGAATCAAGCGACGGTGACGATGAATCAAGAGGATGACGAGTTGGAGTCCAAGGAGAGTGTGCTCCAAAAGTACTTCCTCCAAGAATGGAACATCGTCAAGTCACTCCTCCACGACATCGTTTCCAAATCCCGCGTCTCTGACCCTTCCTCCGTCCACCGACTCAGATCCATTTTGGACAAGTATCAGGAGCAAGGCCAACTTCTAGAACCCTACCTTGAAACCATAGTTTCCCCTCTGATGAACATTATTCGCTCACGAACTCTTGAACTCGGGGTAGCTTCCGATGAAGTTCTCGAAATAATAAAACCTATATGCATCATTGTATATACGTTAGTCACGGTTTGTGGCTACAAATCTGTGATCAAGTTCTTTCCGCATCAAGTTTCCGATCTCGAACTCGCCGTGTCTCTGTTGGAGAAGTGTCACAACACAAATTCGGTGACTTCTTTGAGGCAGGAAAGCACGGGAGAGATGGAGGCTAAATGCGTGACGCTGTTGTGGCTCTATATACTTGTGTTGGTCCCTTTTGACATTTCCAGTGTTGACACCAGTATTGCGAACAATGACAATTTAACTGAGTTCGAGCTCAGTCCTCTTGTGTTGAGAATTATAGGGTTTTCTAAGGATTACCTCTCGACCGCTGGACCAATGCGGACTATGGCTGGACTAGTCCTCTCGAGGCTACTTACTCGTCCGGATATGCCGAAAGCTTTTACCAGCTTTGTTGAGTGGACCCATACAGTCATGTCCTCTGTAACTGAAGATTTACTCCATCATTTCCAGTTACTTGGTGTTGTTGAAGCACTGGCTGCTATTTTCAAGGCAGGTAGTCAGAATCTCTTGCTTGATTCAATTCCTGTTGTTTGGAATGATGCTTCAATGCTGTACAAGTCCTTAGATGCATCTCGAAGTCCTTTGCTCCGCAAGTATCTGATGAAGTTAACTCAACGAATTGGGCTTACTGCTCTTCCTCATCGTTTGCCAGCATGGCGATATATGGGAAGAGTTGCCAAACTGAATGTTTCTTTGAATACATCCAATAAAATTGATCAGTCCAATTTAGGTGTGAACAGCAACGATTCCAACTCAAACGAAATGTCAGACAGGGAAGAAGATGAGGATATGGATGTTCCAGAAAATGTTGAAGAGATTATTGAGATGTTGTTGTCTGGTTTGAGGGATATGGATACTGTTGTCCGCTGGTCTGCAGCAAAAGGTATTGGGCGCATAAGTTCACATCTTACATCTTCCTTTTCTGAGGAGGTTTTATCATCTGTTTTGGAGCTGTTTTCACCTGGTGAGGGTGATGGTTCATGGCATGGAGGCTGCTTAGCTTTGGCTGAACTTGCTCGTAGGGGCTTGCTCTTACCTGCTAGTCTTCCCAAAGTTGTTCCTTTTATCGTGAAGGCACTACATTATGATGTTCGAAGAGGTCCACACAGTGTTGGGTCTCATGTACGTGATGCTGCTGCATATGTATGTTGGGCGTTTGGACGTGCATATTATCATACAGATATGAGGAGCATCTTAAAAGAGTTTGCCCCCCACCTCCTAACAGTGGCATGCTATGACCGTGAGGTTAACTGCAGAAGAGCAGCAGCAGCTGCTTTTCAAGAGAATGTTGGAAGACAAGGGAATTATCCACATGGAATTGACATAGTGAATACTGCGGATTATTTTTCACTTTCTTCGCGAGTAAACTCTTATCTTCATGTTGCTGTTTCCATTGCTCAGTATGAAGGATATCTTTTTCCATTTGTGGATGACCTGCTGGATAGAAAAATCTGTCACTGGGAGAAAAGCTTGCGAGAACTTGCTGCAGAGGCCCTTTCGTTTCTTGTAAAATATGACCCTCAGTATTTTGCGAGCACTGTCATGGAAAAGTTAATTCCTTGTACTCTTTCATCGGATTTATGCATGCGCCATGGTGCAACATTGGCAACCGGAGAACTTGTTTTAGCTTTACACCAATGCAATTTTGCTCTTCCCTCAGATAAACAGAAAAGTCTTGCTGGTGTTGTTCCTGCTATTGAGAAAGCACGGCTTTATCGTGGAAAGGGAGGAGAGATAATGCGTGCAGCTGTTTCTCGATTTATTGAATGCATCTCCATATATAAAGTGGTATTATCAGAAAAGATAAAGAAAAACCTACTTGATACTCTCAATGAGAATTTGAGGCATCCTAATTCTCAGATACAGAATGCAGCTGTTAAAGGCCTGAAACACTTTATCCGTGCATACTTGCATGCTTCAGATAATAAAGGTATGAGTGATGTGATAGCAAAGTACCTCAGTATGTTGACTGATCCAAATGTAGCTGTAAGGAGAGGATCTGCATTGGCAATAGGTGTTTTGCCATATGAGTTATTAGCCAGTCAATGGAGAAATGTGCTTTTGCAGCTTTGTGGCTCTTGTAAAATTGAGGAAAACCCTGAAAACAGAGATGCTGAAGTGCGAGTAAATGCTGTCAAAGGGCTCACATTAGCATGTGAAACATTAATTAATGGAAGAGAAGATACTGCAACCGCTTTTGTTGAGGATGATTTTTCCCTGTTTATTCTGATAAAGAATGAAGTGATGATGAGTTTATTTAAAGCTCTTGATGACTATTCTGTTGATAATAGAGGTGATGTAGGTTCTTGGGTTCGTGAGGCTGCATTAGATGGCCTAGAAAAATGTACATACATGCTCTGTAAGATAGACAAGTCAGTTTGTTTGTCTGGAAGATCTGATGGAAATGAAATTGAGCCTATTGCACATCCCTCAATTGATAGCATGCTTAAGAACAACCAAGAGCTTTCTTTATTTGATGAGAATCTTGCTACCAATTTAGTTGGAGGAATTTGTAAGCAAGCTGTGGAGAAGATGGATAAGCTGAGAGAAGCAGCAGCAAATGTTCTCTACAGAATTTTGTACAACCAGATAATTCATATTCCATATATACCTTTCCGAGAAAAGTTAGAAGAAATCATTCCTAAGGAAGCAAATGCACAATGGGGTGTTCCTTCCTATTCTTACCCACGCTTTATACAGTTACTTCAATTTGGTTGTTATAGCAGAGATGTGCTATCAGGTTTAGTTATATCTATTGGTGGGTTGCAAGATTCTTTGAAGAGGGTATCACTCTCCGCGCTGTTAGAGTATCTAGAAGAGGTTGAATCTGAAGACCCTAATACAAGAACATCTAGGTTATACATGCTATCTGCTGATATCCTGTGGGTTCTCCAACAATACAAGAAATCTGACAGAGTTATCGTACCTACTTTAAAGACCATTGAGATTCTGTTCAGCAAAAAGATATTCCTTAATATGGAGGCTCACACTCCAGCTTTTTGTGGTGCTGTTTTGGATTCTGTGTCATTTGAAGTAAAGGGATCAAAAGACTTCTCTAAGTTGTATGCTGGTATTGCAATACTTGGTTATGTAGCTGCAGTTCAGGAACCTATCAATATGAGGGCCTTTTCGCAACTTCTTAACTTTCTTGGTCATCGTTACCCTAAGATTCGAAAAGCTTCAGCTGAACAACTGTACCTTGTCCTCTTGGAAAATGGGAATCTTGTGGCTGAAGACAAGATTGATAAAGCACTTGAAATTATTTCTGAGACTTGCTGGGATGGCGATATGGATTCAGCTAAACACCAAAGATTAAAATTGTATGAGATTGTAGGTCTGGAGGTGGGGTCACTTGGCAATAATAGTGATGGAACATCAAGGAAAACCAGCAGTAAGAAGCCTGCAAACTTAGATGAAAATGCTTCATATTCCTCATTAGTTGAGTCATCCGGGTTCTAA
>Glyma10g42560.1 sequence type=predicted peptide gene model=Glyma10g42560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGHQVAASEATVASHRHRDPHGLGWEATVGGFAEKYWKVDGWPLIWVGIQLNAFALVFPGHQLLQSELELENPTISVVLFSWKLAFQIPPKSLWTPEVTMEANQATVTMNQEDDELESKESVLQKYFLQEWNIVKSLLHDIVSKSRVSDPSSVHRLRSILDKYQEQGQLLEPYLETIVSPLMNIIRSRTLELGVASDEVLEIIKPICIIVYTLVTVCGYKSVIKFFPHQVSDLELAVSLLEKCHNTNSVTSLRQESTGEMEAKCVTLLWLYILVLVPFDISSVDTSIANNDNLTEFELSPLVLRIIGFSKDYLSTAGPMRTMAGLVLSRLLTRPDMPKAFTSFVEWTHTVMSSVTEDLLHHFQLLGVVEALAAIFKAGSQNLLLDSIPVVWNDASMLYKSLDASRSPLLRKYLMKLTQRIGLTALPHRLPAWRYMGRVAKLNVSLNTSNKIDQSNLGVNSNDSNSNEMSDREEDEDMDVPENVEEIIEMLLSGLRDMDTVVRWSAAKGIGRISSHLTSSFSEEVLSSVLELFSPGEGDGSWHGGCLALAELARRGLLLPASLPKVVPFIVKALHYDVRRGPHSVGSHVRDAAAYVCWAFGRAYYHTDMRSILKEFAPHLLTVACYDREVNCRRAAAAAFQENVGRQGNYPHGIDIVNTADYFSLSSRVNSYLHVAVSIAQYEGYLFPFVDDLLDRKICHWEKSLRELAAEALSFLVKYDPQYFASTVMEKLIPCTLSSDLCMRHGATLATGELVLALHQCNFALPSDKQKSLAGVVPAIEKARLYRGKGGEIMRAAVSRFIECISIYKVVLSEKIKKNLLDTLNENLRHPNSQIQNAAVKGLKHFIRAYLHASDNKGMSDVIAKYLSMLTDPNVAVRRGSALAIGVLPYELLASQWRNVLLQLCGSCKIEENPENRDAEVRVNAVKGLTLACETLINGREDTATAFVEDDFSLFILIKNEVMMSLFKALDDYSVDNRGDVGSWVREAALDGLEKCTYMLCKIDKSVCLSGRSDGNEIEPIAHPSIDSMLKNNQELSLFDENLATNLVGGICKQAVEKMDKLREAAANVLYRILYNQIIHIPYIPFREKLEEIIPKEANAQWGVPSYSYPRFIQLLQFGCYSRDVLSGLVISIGGLQDSLKRVSLSALLEYLEEVESEDPNTRTSRLYMLSADILWVLQQYKKSDRVIVPTLKTIEILFSKKIFLNMEAHTPAFCGAVLDSVSFEVKGSKDFSKLYAGIAILGYVAAVQEPINMRAFSQLLNFLGHRYPKIRKASAEQLYLVLLENGNLVAEDKIDKALEIISETCWDGDMDSAKHQRLKLYEIVGLEVGSLGNNSDGTSRKTSSKKPANLDENASYSSLVESSGF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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