Glyma10g42470 - SoyBase

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Report for Sequence Feature Glyma10g42470

Feature Type:	gene_model
Chromosome:	Gm10
Start:	49416439
stop:	49418492
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g42470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12120	AT	Annotation by Michelle Graham. TAIR10: fatty acid desaturase 2 \| chr3:3860592-3861743 REVERSE LENGTH=383	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0016717	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	SoyBase	N/A	ISS
GO:0016720	GO-mf	Annotation by Michelle Graham. GO Molecular Function: delta12-fatty acid dehydrogenase activity	SoyBase	N/A	ISS
GO:0045485	GO-mf	Annotation by Michelle Graham. GO Molecular Function: omega-6 fatty acid desaturase activity	SoyBase	N/A	ISS
PTHR19353	Panther	FATTY ACID DESATURASE 2	JGI		ISS
PF00487	PFAM	Fatty acid desaturase	JGI		ISS
UniRef100_P48630	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 n=2 Tax=Glycine max RepID=FD6E1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P48630	UniRef	Annotation by Michelle Graham. Best UniRef hit: Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 n=2 Tax=Glycine max RepID=FD6E1_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma10g42470

Locus	Gene Symbol	Protein Name
	FAD2-1A	delta-12 fatty acid desaturase 2 gene 1

Expression Patterns of Glyma10g42470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g42470

Paralog	Evidence	Comments
Glyma20g24530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g42470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g278000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g42470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g42470

Limit To All Plant Sequences

>Glyma10g42470.2   sequence type=transcript   gene model=Glyma10g42470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATGACATGTAATTGAATTTTTTAATTATAAAAAATAATAAAACTTAATTACGTACTATAAAGAGATGCTCTTGACTAGAATTGTGATCTCCTAGTTTCCTAACCATATACTAATATTTGCTTGTATTGATAGCCCCTCCGTTCCCAAGAGTATAAAACTGCATCGAATAATACAAGCCACTAGGCATGGGTCTAGCAAAGGAAACAACAATGGGAGGTAGAGGTCGTGTGGCCAAAGTGGAAGTTCAAGGGAAGAAGCCTCTCTCAAGGGTTCCAAACACAAAGCCACCATTCACTGTTGGCCAACTCAAGAAAGCAATTCCACCACACTGCTTTCAGCGCTCCCTCCTCACTTCATTCTCCTATGTTGTTTATGACCTTTCATTTGCCTTCATTTTCTACATTGCCACCACCTACTTCCACCTCCTTCCTCAACCCTTTTCCCTCATTGCATGGCCAATCTATTGGGTTCTCCAAGGTTGCCTTCTCACTGGTGTGTGGGTGATTGCTCACGAGTGTGGTCACCATGCCTTCAGCAAGTACCAATGGGTTGATGATGTTGTGGGTTTGACCCTTCACTCAACACTTTTAGTCCCTTATTTCTCATGGAAAATAAGCCATCGCCGCCATCACTCCAACACAGGTTCCCTTGACCGTGATGAAGTGTTTGTCCCAAAACCAAAATCCAAAGTTGCATGGTTTTCCAAGTACTTAAACAACCCTCTAGGAAGGGCTGTTTCTCTTCTCGTCACACTCACAATAGGGTGGCCTATGTATTTAGCCTTCAATGTCTCTGGTAGACCCTATGATAGTTTTGCAAGCCACTACCACCCTTATGCTCCCATATATTCTAACCGTGAGAGGCTTCTGATCTATGTCTCTGATGTTGCTTTGTTTTCTGTGACTTACTCTCTCTACCGTGTTGCAACCCTGAAAGGGTTGGTTTGGCTGCTATGTGTTTATGGGGTGCCTTTGCTCATTGTGAACGGTTTTCTTGTGACTATCACATATTTGCAGCACACACACTTTGCCTTGCCTCATTACGATTCATCAGAATGGGACTGGCTGAAGGGAGCTTTGGCAACTATGGACAGAGATTATGGGATTCTGAACAAGGTGTTTCATCACATAACTGATACTCATGTGGCTCACCATCTCTTCTCTACAATGCCACATTACCATGCAATGGAGGCAACCAATGCAATCAAGCCAATATTGGGTGAGTACTACCAATTTGATGACACACCATTTTACAAGGCACTGTGGAGAGAAGCGAGAGAGTGCCTCTATGTGGAGCCAGATGAAGGAACATCCGAGAAGGGCGTGTATTGGTACAGGAACAAGTATTGATGGAGCAACCAATGGGCCATAGTGGGAGTTATGGAAGTTTTGTCATGTATTAGTACATAATTAGTAGAATGTTATAAATAAGTGGATTTGCCGCGTAATGACTTTGTGTGTATTGTGAAACAGCTTGTTGCGATCATGGTTATAATGTAAAAATAATTCTGGTATTAATTACATGTGGAAAGTGTTCTGCTTATAGCTTTCTGCCTAAAATGCACGCTGCACGGGACAATATCATTGGTAATTTTTTTAAAATCTGAATTGAGGCTACTCATAATACTATCCA

Coding sequences of Glyma10g42470

Limit To All Plant Sequences

>Glyma10g42470.1   sequence type=CDS   gene model=Glyma10g42470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTAGCAAAGGAAACAACAATGGGAGGTAGAGGTCGTGTGGCCAAAGTGGAAGTTCAAGGGAAGAAGCCTCTCTCAAGGGTTCCAAACACAAAGCCACCATTCACTGTTGGCCAACTCAAGAAAGCAATTCCACCACACTGCTTTCAGCGCTCCCTCCTCACTTCATTCTCCTATGTTGTTTATGACCTTTCATTTGCCTTCATTTTCTACATTGCCACCACCTACTTCCACCTCCTTCCTCAACCCTTTTCCCTCATTGCATGGCCAATCTATTGGGTTCTCCAAGGTTGCCTTCTCACTGGTGTGTGGGTGATTGCTCACGAGTGTGGTCACCATGCCTTCAGCAAGTACCAATGGGTTGATGATGTTGTGGGTTTGACCCTTCACTCAACACTTTTAGTCCCTTATTTCTCATGGAAAATAAGCCATCGCCGCCATCACTCCAACACAGGTTCCCTTGACCGTGATGAAGTGTTTGTCCCAAAACCAAAATCCAAAGTTGCATGGTTTTCCAAGTACTTAAACAACCCTCTAGGAAGGGCTGTTTCTCTTCTCGTCACACTCACAATAGGGTGGCCTATGTATTTAGCCTTCAATGTCTCTGGTAGACCCTATGATAGTTTTGCAAGCCACTACCACCCTTATGCTCCCATATATTCTAACCGTGAGAGGCTTCTGATCTATGTCTCTGATGTTGCTTTGTTTTCTGTGACTTACTCTCTCTACCGTGTTGCAACCCTGAAAGGGTTGGTTTGGCTGCTATGTGTTTATGGGGTGCCTTTGCTCATTGTGAACGGTTTTCTTGTGACTATCACATATTTGCAGCACACACACTTTGCCTTGCCTCATTACGATTCATCAGAATGGGACTGGCTGAAGGGAGCTTTGGCAACTATGGACAGAGATTATGGGATTCTGAACAAGGTGTTTCATCACATAACTGATACTCATGTGGCTCACCATCTCTTCTCTACAATGCCACATTACCATGCAATGGAGGCAACCAATGCAATCAAGCCAATATTGGGTGAGTACTACCAATTTGATGACACACCATTTTACAAGGCACTGTGGAGAGAAGCGAGAGAGTGCCTCTATGTGGAGCCAGATGAAGGAACATCCGAGAAGGGCGTGTATTGGTACAGGAACAAGTATTGA

>Glyma10g42470.2   sequence type=CDS   gene model=Glyma10g42470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCTAGCAAAGGAAACAACAATGGGAGGTAGAGGTCGTGTGGCCAAAGTGGAAGTTCAAGGGAAGAAGCCTCTCTCAAGGGTTCCAAACACAAAGCCACCATTCACTGTTGGCCAACTCAAGAAAGCAATTCCACCACACTGCTTTCAGCGCTCCCTCCTCACTTCATTCTCCTATGTTGTTTATGACCTTTCATTTGCCTTCATTTTCTACATTGCCACCACCTACTTCCACCTCCTTCCTCAACCCTTTTCCCTCATTGCATGGCCAATCTATTGGGTTCTCCAAGGTTGCCTTCTCACTGGTGTGTGGGTGATTGCTCACGAGTGTGGTCACCATGCCTTCAGCAAGTACCAATGGGTTGATGATGTTGTGGGTTTGACCCTTCACTCAACACTTTTAGTCCCTTATTTCTCATGGAAAATAAGCCATCGCCGCCATCACTCCAACACAGGTTCCCTTGACCGTGATGAAGTGTTTGTCCCAAAACCAAAATCCAAAGTTGCATGGTTTTCCAAGTACTTAAACAACCCTCTAGGAAGGGCTGTTTCTCTTCTCGTCACACTCACAATAGGGTGGCCTATGTATTTAGCCTTCAATGTCTCTGGTAGACCCTATGATAGTTTTGCAAGCCACTACCACCCTTATGCTCCCATATATTCTAACCGTGAGAGGCTTCTGATCTATGTCTCTGATGTTGCTTTGTTTTCTGTGACTTACTCTCTCTACCGTGTTGCAACCCTGAAAGGGTTGGTTTGGCTGCTATGTGTTTATGGGGTGCCTTTGCTCATTGTGAACGGTTTTCTTGTGACTATCACATATTTGCAGCACACACACTTTGCCTTGCCTCATTACGATTCATCAGAATGGGACTGGCTGAAGGGAGCTTTGGCAACTATGGACAGAGATTATGGGATTCTGAACAAGGTGTTTCATCACATAACTGATACTCATGTGGCTCACCATCTCTTCTCTACAATGCCACATTACCATGCAATGGAGGCAACCAATGCAATCAAGCCAATATTGGGTGAGTACTACCAATTTGATGACACACCATTTTACAAGGCACTGTGGAGAGAAGCGAGAGAGTGCCTCTATGTGGAGCCAGATGAAGGAACATCCGAGAAGGGCGTGTATTGGTACAGGAACAAGTATTGA

Predicted protein sequences of Glyma10g42470

Limit To All Plant Sequences

>Glyma10g42470.1   sequence type=predicted peptide   gene model=Glyma10g42470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLAKETTMGGRGRVAKVEVQGKKPLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNKY*

>Glyma10g42470.2   sequence type=predicted peptide   gene model=Glyma10g42470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLAKETTMGGRGRVAKVEVQGKKPLSRVPNTKPPFTVGQLKKAIPPHCFQRSLLTSFSYVVYDLSFAFIFYIATTYFHLLPQPFSLIAWPIYWVLQGCLLTGVWVIAHECGHHAFSKYQWVDDVVGLTLHSTLLVPYFSWKISHRRHHSNTGSLDRDEVFVPKPKSKVAWFSKYLNNPLGRAVSLLVTLTIGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNKY*

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