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Report for Sequence Feature Glyma10g42420
Feature Type: gene_model
Chromosome: Gm10
Start: 49360878
stop: 49370199
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g42420
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G55820 AT
Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22586287-22594035 FORWARD LENGTH=1826
SoyBase E_val: 5.00E-13 ISS
GO:0000226 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization
SoyBase N/A ISS
GO:0000911 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation
SoyBase N/A ISS
GO:0006270 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA replication initiation
SoyBase N/A ISS
GO:0006275 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication
SoyBase N/A ISS
GO:0006306 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA methylation
SoyBase N/A ISS
GO:0006342 GO-bp
Annotation by Michelle Graham. GO Biological Process: chromatin silencing
SoyBase N/A ISS
GO:0009553 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo sac development
SoyBase N/A ISS
GO:0009909 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of flower development
SoyBase N/A ISS
GO:0009957 GO-bp
Annotation by Michelle Graham. GO Biological Process: epidermal cell fate specification
SoyBase N/A ISS
GO:0010389 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle
SoyBase N/A ISS
GO:0016570 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone modification
SoyBase N/A ISS
GO:0031047 GO-bp
Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA
SoyBase N/A ISS
GO:0048316 GO-bp
Annotation by Michelle Graham. GO Biological Process: seed development
SoyBase N/A ISS
GO:0048449 GO-bp
Annotation by Michelle Graham. GO Biological Process: floral organ formation
SoyBase N/A ISS
GO:0048451 GO-bp
Annotation by Michelle Graham. GO Biological Process: petal formation
SoyBase N/A ISS
GO:0048453 GO-bp
Annotation by Michelle Graham. GO Biological Process: sepal formation
SoyBase N/A ISS
GO:0051567 GO-bp
Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation
SoyBase N/A ISS
GO:0051726 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_UPI000233D0B2 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233D0B2 related cluster n=1 Tax=unknown RepID=UPI000233D0B2
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g42420
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g42420
Paralog Evidence Comments
Glyma20g24645 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g42420 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g277400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g42420
Coding sequences of Glyma10g42420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g42420.2 sequence type=CDS gene model=Glyma10g42420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCGGCGATGGAGAAGCACGTCGTGCAGATCTTCGAGCGAAAGAAGCGAATCATCGACCAATCACGACAACAGTGCCATCTCTGGGAGCAACACCTTTTCCCCAAACTCCGCCTCAACGGAATTCCCCCTCCGCCATGGCTCTTCAACTCTTCCCTTCAGGCAAATCCACAAGGGTTAAGCAAAGATGATCTCGTTTCCGAAGTTCTAATTTCGCAACCACAGTATATAGTTCCTTTCCCTGGTCTGTACAGTAATCTAGATGCCGTGTCCTGTGGTGTTCACTATCCAATTGGTTTGCATAATGAAGGTCGTGCTTTAGAAAAGGAGTGTAACACGGGAGATGGGGTTTCGAATTTGCCAGATTGTTCTGTCAACTATGCTGTATCTGCCTCAAGTGGTCCTCCAGAATTGGATTCAGGTGCTGTATCACCACCTCAGAATCAGATTGAAGCAAGAGCCTCTGACAGTCACCACGACCCAGCTCCGTCTCTCGCAAAGTTGCAAAGGTCAAAGCCGAGGCAGAAGGCTCTGGAGCTACGTAATAGTGCAAAAGCACCCAGACGATTGTCAAGAGAAGATGATAATGCCAGTGTCTGTGCTGGCACAGTTACAGGTTCTGCACCCTCAAGTCAAGAGGCAGAACATGCAATGGAGTCGGATGTAGTCAAAGATTTTCATTCCAACATCCAAAGTTGTTCCATGGAAGAAACAAAAGCATGTGATTGTGTAACTAAGTACTCTGGCCGGATGACAAGATCTAAAAGTTCATTCCAGAAATTCAACTCTTTGAATGTTGCCAGTCCTTCTGTAGCGAAGGAAGATGGCCCTCCGCCTAATAATTTGAATGAGTCATTTGAGATAGTCAACCAACCTTGTTTTGCAAATGGAAGTTGTGGCGTCAATGAAGCAAACAAAGGGGATTATCAGAGCAACGAAGCTGGAAAAAGTGTGCATGATGAGAGATTAACAAAATCTAGAAGTTCTAGCCAGGCCAGATGTAACAGTGAACTGTTGAAGCTTGACAGCACCTTGGGCAGTGGCAAAGGAGTTGGATTCTGTGATCACAGGCAACCAATTACACATGCTGAACTAACAGAATTAAGCAAAGTCGCTGATTGTAACAATGGAAGTGGTAGGAATACAGTTAAAGATGGAAATTCCTGCCTCAGCAAACAAGAAAGTAACATTCATGGTATGATAAAATTACTTAGAAGTTCCTGCCCATCACCAGGGCATGATCTTTTGATGACTAGTGGTTCTGTAAGGTCTATTGATAAATCAGTGCCATTACCTCAACCTTTAATTCCACAGAATTCACAGGATCCTGTGGTGTCTGTTGTTGGGACCTTAAGTACTCAAAAGGATCCTGACTTTTCTGCACTAAAACCAAAAGATCATTTGAGTAGAAGTGGTTCTGAAACGATTGAAAAAGTCCAAAGTAAGAAGTTTTGGAATATACAGCCTACCAAACTGGATGCTACAAGGTTATCTTCAAGTCCAAAGTATTCCAAATTAGATATAGAAATTGGCAGGAATTCTGCAGTCAAGGAGAACGTTGCAGCACTAGCTACCTCTGGAAATATGAGGGCTGTGGCTACTTCTGCAAATGAAGGATCATTAAGGCCAGTGAGTTCTTCCAATTTTTATGGTGGGTCTTTACATGCAGAATCAGTAAATGTTGAAGCAGTGGTGGATGAGAAAGTCTTGGATGCCCAAGAAAATATACCATATGATGCCCTTCCCACTGATAATGTTGAGCACAGATTTGCTGCAATTGTTGATGAAGTTGATGCTGACTCTGATGGATTAGTTGAAAAAGATCCTTCTTGTGTTATCCCTAAGGTTAGGCAGAATGTATCAGTCATGAAGCTGCCCGCTGATTTTATCATGTCTGTGATGCCTATGCAACTTGATTTTGATGATGTAGAGGAGACAAGTGTGAGTGGAATTTGTAGTTCTGATTTGAAAGAGGGGCAACAGGGAGTGTCACCAGAAGAACCTCTGAACTCGTTGGAACCTGTAAAATTACTTGAAGAGGAAACTTCTTCTGTATGCCAAATTAAATGTAACTCTTCGGGGGAGATGCCTTTGCTGCAAATGCGGGAAGTACCAATCAGAGAAGGGGAGCCTTATATGGAATATTGCGCAAGCCACTTCAAGGAGGAAGATATAGCTAGGGCAACACTAAGTGCCGTGCCACCAAACAAAGAGATACCTATGGTTCAGAATGAATTCTGTATTCGTACTTCTTCGTTGATGTATCATTCAAGTCCTTCACAAGTTGCTGGTGAAAATTCATCAAGAAGTTTGTCAAAAGAAGTTATGCCATCAAAATTTGTTTCAGTAAACAGTAAACTAGAAAATGTTGAATGTAGTACTAAGTTGGCAAATTTTTCTTCTGAAGCAGTTATGGGAAATGATCTGCATAAATCCACAGATGAAAGTGTTACAAATTTCACTATTGGGTTCCCATTTTCTGCTCCTATGGATGATGTTAATGTTGGTTTGGCACAACAGCCCCCCAATAGCATTACCTTGTGTAAAGATGGTGAGGTGTTGCATAAGACATTGCACAGTGATGGAAAAATTACCAGCTTTTCAACTGATTTCCAGATTTTCAGAATTTCCCCCAAAAGTTTCACTTATGATGTGGAACATTCTTGTCCTCAGCATAAAAGAAGGAAGATTGACATTGAAACAGAGAGATTTCGATCCGCCTCTTCAAACCTCTTGGAAAAGCCATGTGATTCTATTGACCAAGGGCCTGTGAGTAGAAGCTTGAGTATTGAAGAAGACAGCCGGGAGGTTGCCCTAGAAGTTCAACATTTGCCATCTGATCCAGAGGATGATACAGGACATCAATCTATTAGTAACATCCCAACGGACGAAAAGCAATACAACGGGGAATGCCAAACAATGGAAGACTCCTCACTTAAAGTGAGAAAAGAAGAGAGCTGTATCTTGGATGGAAGAGACAGAAGTGAAGACACCCTTGTGTTGGCAGTGGCAAAAACATCAGGTTTTAGTATTGACCCAACGATGGGATGCACCATGGATGAGAAGGTGGAGTTGTGGCATCATCAGGTTAGTTGTGGACAGGAATGTGCAGAACATCTTGAACGAAGCACTTCAAGTAGAAAAGTTTGTCCAGGAGGAAATGCTAAATTCTCAAATGGAATGCCTGCTTCTCCAGGAATGCAATGCTTGGATTTGGTTGGTACAGGTGAGACTATAGCAGAGCTTGAAGGGCTTATTATGCAAGCAGATAATGCACAGCCATGCATTGCTGGAGATCAAATAGATTTGGAAGAGATAGATCTTCCAAGTAACTCAATAGATTATACATCCCTTGGTAAATCTAGGTTCATGCATTCTTCATCGTACAATTCTTTAACCCCTTATAAGTTGCATAACATACCAGAGCCCTATCAGTCTTTACCTAATGGACTACTGGAGGGCTTAGGTATAAGGACTTCCCTTTCTCTAAGCGATGGAAGCCCGAGGTCCCTTTCTGATTGCCAACCAAATTGCAAGGTCAGTACACTTCTTCAGTTCAAACTCTTTGGGATCGAATTAATTCAAACTTAG
Predicted protein sequences of Glyma10g42420
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g42420.2 sequence type=predicted peptide gene model=Glyma10g42420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSAMEKHVVQIFERKKRIIDQSRQQCHLWEQHLFPKLRLNGIPPPPWLFNSSLQANPQGLSKDDLVSEVLISQPQYIVPFPGLYSNLDAVSCGVHYPIGLHNEGRALEKECNTGDGVSNLPDCSVNYAVSASSGPPELDSGAVSPPQNQIEARASDSHHDPAPSLAKLQRSKPRQKALELRNSAKAPRRLSREDDNASVCAGTVTGSAPSSQEAEHAMESDVVKDFHSNIQSCSMEETKACDCVTKYSGRMTRSKSSFQKFNSLNVASPSVAKEDGPPPNNLNESFEIVNQPCFANGSCGVNEANKGDYQSNEAGKSVHDERLTKSRSSSQARCNSELLKLDSTLGSGKGVGFCDHRQPITHAELTELSKVADCNNGSGRNTVKDGNSCLSKQESNIHGMIKLLRSSCPSPGHDLLMTSGSVRSIDKSVPLPQPLIPQNSQDPVVSVVGTLSTQKDPDFSALKPKDHLSRSGSETIEKVQSKKFWNIQPTKLDATRLSSSPKYSKLDIEIGRNSAVKENVAALATSGNMRAVATSANEGSLRPVSSSNFYGGSLHAESVNVEAVVDEKVLDAQENIPYDALPTDNVEHRFAAIVDEVDADSDGLVEKDPSCVIPKVRQNVSVMKLPADFIMSVMPMQLDFDDVEETSVSGICSSDLKEGQQGVSPEEPLNSLEPVKLLEEETSSVCQIKCNSSGEMPLLQMREVPIREGEPYMEYCASHFKEEDIARATLSAVPPNKEIPMVQNEFCIRTSSLMYHSSPSQVAGENSSRSLSKEVMPSKFVSVNSKLENVECSTKLANFSSEAVMGNDLHKSTDESVTNFTIGFPFSAPMDDVNVGLAQQPPNSITLCKDGEVLHKTLHSDGKITSFSTDFQIFRISPKSFTYDVEHSCPQHKRRKIDIETERFRSASSNLLEKPCDSIDQGPVSRSLSIEEDSREVALEVQHLPSDPEDDTGHQSISNIPTDEKQYNGECQTMEDSSLKVRKEESCILDGRDRSEDTLVLAVAKTSGFSIDPTMGCTMDEKVELWHHQVSCGQECAEHLERSTSSRKVCPGGNAKFSNGMPASPGMQCLDLVGTGETIAELEGLIMQADNAQPCIAGDQIDLEEIDLPSNSIDYTSLGKSRFMHSSSYNSLTPYKLHNIPEPYQSLPNGLLEGLGIRTSLSLSDGSPRSLSDCQPNCKVSTLLQFKLFGIELIQT*