SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39210 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr2:16366287-16368231 REVERSE LENGTH=601 | SoyBase | E_val: 0 | ISS |
| GO:0006865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2504 | KOG | Monocarboxylate transporter | JGI | ISS | |
| PTHR21576 | Panther | UNCHARACTERIZED NODULIN-LIKE PROTEIN | JGI | ISS | |
| PTHR21576:SF8 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF06813 | PFAM | Nodulin-like | JGI | ISS | |
| PF07690 | PFAM | Major Facilitator Superfamily | JGI | ISS | |
| UniRef100_I1LEZ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEZ2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q535K6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nitrate and chloride transporter n=1 Tax=Glycine max RepID=Q535K6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g42340 not represented in the dataset |
Glyma10g42340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g24710 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g276700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g42340.1 sequence type=CDS gene model=Glyma10g42340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTAGTTGGAGGTTCGAATACCGGTGTTCATGGATGGCGAGACATCAAGAGTCTCACCGTCCAAGTCATCACCGGGAGATGGTTCGTGGTGTTCGCCTCCTTTCTAATCATGGCCGCCGCTGGAGCCACCTACATGTTCGGTCTCTATTCCAGCGACATCAAAACAACCCTCGGTTACGACCAAACCACTCTCAATCTCCTCAGTTTCTTCAAGGACTTGGGCACCAACGTTGGGGTCATCTCAGGCCTAATCAACGAGGTCGCTCCACCTTGGGTTGTCCTCGCCATTGGTGCCATCCTCAACTTCTTTGGCTACTTCATGATTTGGCTTTCCGTCACCCAAAAAATAGCCAAACCCAAAGTGTGGCAGATGTGTCTCTACATCTGCATAGGCGCTAACTCTCAGACCTTCGCCAACACTGGTTCCCTTGTCACTTGTATCAAGAACTTTCCAGAAAGAAACGGGGTCGTGTTAGGTATCCTCAAAGGTTACCTCGGTCTTAGTGGTGCAATCATCACACAACTCTACTCTGCCATATACTATGATGACACAAGGGCTTTGATTTTGCTCATAGCTTGGCTCCCCGCTGCTATTTCCTTCGCTTCCCTTCGAACCATTCGCTACATGAAGCCTGTTAGGCAGCCTAATGAGCTCAATGTTTTCTACAAGTTTCTGTATATTTCTCTTGGCCTTGCTGGGTTTCTTTTGGTCATGATCACTGTACAGAAAAGGGTCAACTTCACTCAGAGTGAGTTTGGTGTCAGCTCTGCTATGGTGCTCTTTCTGCTCCTCCTCCCACTTGCTGTTGTTTCTATGGAGGAATATAAGGTCTGGCAGAGTAAAAGGCTCGCTTTGGTTGACCCCTCCCCGGTGAAAATAGTAACCGATCAGGGTGAAAAGGTGAAACCCAATGAGACTACTGATGGTAGCAGCAATTCACTTTCTTCCAATGATACCAGGTGGTGGGAAAATGTTTTTAGTCCACCAGCAAGAGGTGAGGACTATACAATACTTCAGGCGCTATTCAGCATCGACATGTGGATACTATTCATATGTAGCATATTTGGTATTGGTGGCACGTTGACCGCAATAGATAACCTTGGTCAGATAGGAAAGTCGCTTAGATACCCAAAGAAAAGCATAAGCACTTTCGTGTCCCTAGTAAGCATTTGGAATTATCTAGGAAGGGTTTTCGCTGGATTTGTTTCTGAACATTATCTACAAAAGTACAAGTTCCCTCGTCCTCTCATGCTTACACTAACCATGCTCTTGTCATGTGCTGGTCACCTTCTGATTGCATTTGACGTGCCAAATGGTCTTTATGCGGCTTCGGTGATTATTGGGTTTTGTTTTGGCGCACAGTGGCCTTTACTTTTTGCCATTATATCCGAGCTTTTTGGACATAAATATTATGCAACTTTGTATAACTTTGGAAGTGCAGCAAGTCCACTAGGGCTATATGTGCTTAATGTGGTGATGACTGGGCATTTGTATGACAAAGAAGCCAAGAAGCAACTTGCGGAATTGGGGCTTGAGAGAAAGGAAGGACAGGAATTGAACTGCATTGGGATCCATTGCTTCAAGTTATCCTTCATTATTATCACAGCTGCTACTTTCTTTGGTGTTATTGTTTCACTCATCTTGGTAGCTAGGACAAGAACCTTTTACAAAAGTGACATATACAAGAGATACCGGGATGCTGCAGCCACGGTGACAGAAGCTGAAATGGCGAAGGTGGAGAACGGAAACAACGCAAAGAAAGATGAGAAACATGTGGTGCCAACTCAGGAGTAA
>Glyma10g42340.1 sequence type=predicted peptide gene model=Glyma10g42340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVGGSNTGVHGWRDIKSLTVQVITGRWFVVFASFLIMAAAGATYMFGLYSSDIKTTLGYDQTTLNLLSFFKDLGTNVGVISGLINEVAPPWVVLAIGAILNFFGYFMIWLSVTQKIAKPKVWQMCLYICIGANSQTFANTGSLVTCIKNFPERNGVVLGILKGYLGLSGAIITQLYSAIYYDDTRALILLIAWLPAAISFASLRTIRYMKPVRQPNELNVFYKFLYISLGLAGFLLVMITVQKRVNFTQSEFGVSSAMVLFLLLLPLAVVSMEEYKVWQSKRLALVDPSPVKIVTDQGEKVKPNETTDGSSNSLSSNDTRWWENVFSPPARGEDYTILQALFSIDMWILFICSIFGIGGTLTAIDNLGQIGKSLRYPKKSISTFVSLVSIWNYLGRVFAGFVSEHYLQKYKFPRPLMLTLTMLLSCAGHLLIAFDVPNGLYAASVIIGFCFGAQWPLLFAIISELFGHKYYATLYNFGSAASPLGLYVLNVVMTGHLYDKEAKKQLAELGLERKEGQELNCIGIHCFKLSFIIITAATFFGVIVSLILVARTRTFYKSDIYKRYRDAAATVTEAEMAKVENGNNAKKDEKHVVPTQE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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