Glyma10g42300 - SoyBase

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Report for Sequence Feature Glyma10g42300

Feature Type:	gene_model
Chromosome:	Gm10
Start:	49277476
stop:	49282831
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g42300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68650	AT	Annotation by Michelle Graham. TAIR10: Uncharacterized protein family (UPF0016) \| chr1:25775825-25777683 FORWARD LENGTH=228	SoyBase	E_val: 2.00E-117	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2881	KOG	Predicted membrane protein	JGI		ISS
PTHR12608	Panther	TRANSMEMBRANE PROTEIN HTP-1 RELATED	JGI		ISS
PF01169	PFAM	Uncharacterized protein family UPF0016	JGI		ISS
UniRef100_B9ST29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein TPARL, putative n=1 Tax=Ricinus communis RepID=B9ST29_RICCO	SoyBase	E_val: 3.00E-127	ISS
UniRef100_I1LEY6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEY6_SOYBN	SoyBase	E_val: 2.00E-161	ISS

Expression Patterns of Glyma10g42300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g42300 not represented in the dataset	Glyma10g42300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g42300

Paralog	Evidence	Comments
Glyma20g24750	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g42300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g276300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g42300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g42300

Limit To All Plant Sequences

>Glyma10g42300.5   sequence type=transcript   gene model=Glyma10g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAGGAAGGGAATTGAATCCCATGCTCTGCACAAAATATAATTTTTTAAAAGCAAAAAAGAAGCCACGCACTCACACGTGCACCTTCTACTCTGAGCAGCGACTATACATTTGTCCTTCTTCAATGTTCTCCTTCCTCCGATAACTTTCACTATAACCAACGAACACACTCTCACATAACTCTCTCTCTCTCTCTCTCTCTGAGTCCTTCTTCTTCTTCGTCCAGCCAACATGAGCTCAATCGTTCAGGGTTTCTCCAAGTCACTGGCCATGACCATTCTCTCTGAGATCGGTGACAAAACGTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCTAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGCTCTTGTTGGCTGGGCAGCTCCAAATCTGATCTCTCGCACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTGAAAGATGCTATATTTGAACAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCAATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGCTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTTCTGCTGCTGTTGTTGGAGGGAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGAAGGCTGTGCTATTGGTTAGTGATTATTCATTGTGTTTTTTACAAGACATGTTTAGCAAATATGTTTGTTATTATGGTTGGGGTTGGTTGCTAAAAATGCTCAGCTTCGTGCCTAATCCTCCCCAGGTCATAGATTTCATTATTTCGACCCTTTTGTAGTTTAAAATAAATTTACCATTGTAGGATGACAGCCAAATTCAATATAAACAGTCAACGTGAGTGGATTGTTATGTTTAGACAAACATGTGCCTACACTTAATCTCTCATTATATTCATCCCTTCATCCATTAAATCCACGTGTAAATTTCCAATGCTTGAGGAATGTAATGGACTAGTTTGGGGGAAAAAATTGTCTTTAGTTTCCAAGGTTGTTTTATTGATGTCCCTGGGAAACTGTCTAATGCCATAGAAATGGGAATGCATGCATCTTGGAGGAAGTAATAAAACAAGAAGTAGAGGGGTTGATACTGTTGGGAGGAAAACCATGCTTACTTCAGTTGCTTGTATGCATATGATGTTGACAGTGTTGAATCAATGCCCTTGGGGGTGATCTTTTTGTCCTTGCTTGTGTAAGAGGGGATGAAAAACTTTTCCATCATTGGAGCAGTAGTTCAAAGTGAAACTGGTGGGTCACAACGCATTGTGCACCCAATTTGGGTGCACTTAAGTTATGTACTATAATCTCTCCTTGCAAAGTGGGTAGAACCATCCCAAGTGCTGTAACTTGACTGATTATCACTCGTGATCTTTGTCTCTCACAAGGCTGATCTTTAGTTGTTTCCCCCTAAAGTGTCAAGCACCATTGTACAAGTCTTGCTCCACACCGATAATTTCAACTGTAACAAACTTTTAAAAAAATCCTAGTTAACCGCTCCACCCCAAAATGAAAATTCTTGCTGTTCAATAGTGATGGTGACCTGCCATGACCTCCTATCCCTTGCCAGTATAAAAAAGGATCTTGCCAACCAATGTCAGAAGAACAACATTGATTAAGAAACTAAAAAAGAAAAAAATATTTATTGTGGATATTATAAGAGAAGATAAAAAAAAAATTATGAATGATGTAATTTTACGTCTTTTAATAAAAATATTTTTTCTTTAAGTACATTAGCATGTCCTTAGCATCTGCTTATAAAAGAATGTTTAGAGACGCCATAATCCTAAATAACATTTTTATGTGAGTTTGTTATTACAGTTGGATGATGTCATGCTACCAAATTGATGCCCGACAAGTAGTTATTTTTTCGTATTAGAGAATCAAAGCTTCGGAAGGTGTTTCTCCATGCGAAAAAGATTGAACATTTTTCATTTATAAAGAAAGCAAAAAACCGAATTGCTCAATTTGGCAATGAATAGACAATTGGTTAGGTCATCCATAATTTGATGAAGTAAAAAATTAATTAAGAATTAATTGTAATTGGGTAAGAATTAATGGCATAAAACAATTGTAAAATAAATTAAACTTTATGAGACTTAGGT

>Glyma10g42300.6   sequence type=transcript   gene model=Glyma10g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGCACTCACACGTGCACCTTCTACTCTGAGCAGCGACTATACATTTGTCCTTCTTCAATGTTCTCCTTCCTCCGATAACTTTCACTATAACCAACGAACACACTCTCACATAACTCTCTCTCTCTCTCTCTCTCTGAGTCCTTCTTCTTCTTCGTCCAGCCAACATGAGCTCAATCGTTCAGGGTTTCTCCAAGTCACTGGCCATGACCATTCTCTCTGAGATCGGTGACAAAACGTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCTAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGCTCTTGTTGGCTGGGCAGCTCCAAATCTGATCTCTCGCACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTGAAAGATGCTATATTTGAACAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCAATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGCTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTTCTGCTGCTGTTGTTGGAGGGAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGAAGGCTGTGCTATTGTTTGTTATTACAGTTGGATGATGTCATGCTACCAAATTGATGCCCGACAAGTAGTTATTTTTTCGTATTAGAGAATCAAAGCTTCGGAAGGTGTTTCTCCATGCGAAAAAGATTGAACATTTTTCATTTATAAAGAAAGCAAAAAACCGAATTGC

Coding sequences of Glyma10g42300

Limit To All Plant Sequences

>Glyma10g42300.4   sequence type=CDS   gene model=Glyma10g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCAATCGTTCAGGGTTTCTCCAAGTCACTGGCCATGACCATTCTCTCTGAGATCGGTGACAAAACGTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCTAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGCTCTTGTTGGCTGGGCAGCTCCAAATCTGATCTCTCGCACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTGAAAGATGCTATATTTGAACAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCAATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGCTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTTCTGCTGCTGTTGTTGGAGGGAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGA

>Glyma10g42300.5   sequence type=CDS   gene model=Glyma10g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCAATCGTTCAGGGTTTCTCCAAGTCACTGGCCATGACCATTCTCTCTGAGATCGGTGACAAAACGTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCTAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGCTCTTGTTGGCTGGGCAGCTCCAAATCTGATCTCTCGCACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTGAAAGATGCTATATTTGAACAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCAATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGCTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTTCTGCTGCTGTTGTTGGAGGGAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGA

>Glyma10g42300.6   sequence type=CDS   gene model=Glyma10g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCTCAATCGTTCAGGGTTTCTCCAAGTCACTGGCCATGACCATTCTCTCTGAGATCGGTGACAAAACGTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCTAGACGCCTAGTCTTATCAGGTTGCTTATCGGCTTTGATTGTGATGACCATTCTCTCTGCTCTTGTTGGCTGGGCAGCTCCAAATCTGATCTCTCGCACATGGACTCATCACATTACAACATTTTTATTCTTGGGATTTGGACTTTGGTCCTTGAAAGATGCTATATTTGAACAAGGGGATGCGGAAGAATTGGCTGAAGTTGAAGCTAAATTGGATAAAGATTGGAAGGCTAGCAATGGAGCTACAAAAAATAGCAATAAGGATGATGATGCCACAAAAAAGCATAAACGGTCATTTTTATCTCAGTTTTTTTCTCCTATCTTTTTACAGGCATTTTCAATCACCTTTTTTGGTGAATGGGGTGACAAGAGCCAGCTGGCTACCATAGGTTTGGCTGCAGATGAGAACCCATTTGGTGTGGTTCTTGGAGGGATTCTGGGACAAGCATTGTGCACTTCTGCTGCTGTTGTTGGAGGGAAGAGTTTAGCTTCTCAGATATCTGAAAAAATTGTTGCACTCTCAGGTGGAATTCTTTTCATTGTTTTTGGAATTCAGTCATTCCTCTCTCCAGTTGAATCATGA

Predicted protein sequences of Glyma10g42300

Limit To All Plant Sequences

>Glyma10g42300.4   sequence type=predicted peptide   gene model=Glyma10g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIVQGFSKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEQGDAEELAEVEAKLDKDWKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGQALCTSAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES*

>Glyma10g42300.5   sequence type=predicted peptide   gene model=Glyma10g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIVQGFSKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEQGDAEELAEVEAKLDKDWKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGQALCTSAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES*

>Glyma10g42300.6   sequence type=predicted peptide   gene model=Glyma10g42300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSIVQGFSKSLAMTILSEIGDKTFFAAAILAMRHPRRLVLSGCLSALIVMTILSALVGWAAPNLISRTWTHHITTFLFLGFGLWSLKDAIFEQGDAEELAEVEAKLDKDWKASNGATKNSNKDDDATKKHKRSFLSQFFSPIFLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGQALCTSAAVVGGKSLASQISEKIVALSGGILFIVFGIQSFLSPVES*

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