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Report for Sequence Feature Glyma10g42280

Feature Type:gene_model
Chromosome:Gm10
Start:49261820
stop:49265991
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g42280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68640AT Annotation by Michelle Graham. TAIR10: bZIP transcription factor family protein | chr1:25769739-25772303 REVERSE LENGTH=452 SoyBaseE_val: 6.00E-154ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0048451GO-bp Annotation by Michelle Graham. GO Biological Process: petal formation SoyBaseN/AISS
GO:0048453GO-bp Annotation by Michelle Graham. GO Biological Process: sepal formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PTHR22952:SF55Panther PAN (PERIANTHIA), DNA BINDING / TRANSCRIPTION FACT JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_B9ST26UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor HBP-1b(C1), putative n=1 Tax=Ricinus communis RepID=B9ST26_RICCO SoyBaseE_val: 0ISS
UniRef100_I1LEY4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEY4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g42280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g42280
ParalogEvidenceComments
Glyma20g24766 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g42280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g276100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g42280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g42280
>Glyma10g42280.1   sequence type=CDS   gene model=Glyma10g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAAGCTTCAACACAACCGAATCAGAATCGACCTCACCTCTATATTCCCATTCTCCCTTCTATCACCGGGGAAATGACCCCAGCCGAAATCCAACGCGTTTCTCGGATCTTCAGCATTCTTTTCGGCAACACGATGCCGTTGATTTAAGCTCAAGTTCTGTGTTTGGTGCAAAGTCGAGCAATGTGGCTGTTGTTGCAAGCAACTTGCAGTGTGGGACATTCAACACGAACCTTGGGTGTGCAGAATTTGGTTCGATAGAGCAGCGAGGCATGTTTCAGAGAGGAACCAATAGCGCCACCACCGTGTCCATGGGGAACCGGCACGTTGAGAACTGGGCAGAAGATAGCCAACACACTGAAGATACTTGCACAGATATAGACACCGATGATAAAAACCAATGTTTCTCAACTGTGTCTTGGTGCAATGGAGTTGGGGACGGGGCACTTGTAGTTGTAGACTCACAGGATCAAAGTAAGACTAAGGTTAAAGCTGAAGACCAGAAGACCGTACGTAGGCTAGCTCAGAATCGTGAGGCTGCTAGGAAGAGTCGGTTGAGGAAAAAGGCATATGTGCAACAGTTGGAGACCAGTCGAGTTAGACTTGCGCAATTAGAGCAAGAACTTCAACGGGCACGTCAGCAGGGTGCATTTATTGCAACTGGAAACCAGGGGGATCGCAGTCATTCTGCTGTTGGAAATGGTGCCCTAGCATTTGACATGGACTATGCCCGTTGGTTTGATGAGCATCAACGGCTGATCAATGATATAAGATCAGCTATAAATTCTCAAATGGATGAGAATGAACTGCACCTTCTTGTAGATGGAGTGATGGCACATTATGATGAATTATTTAGGTTGAAGAGCATAGGGGCAAAGGCTGATGTATTTCACATACTTTCTGGGATGTGGAAGACACCTGCAGAAAGATGCTTCATATGGCTCGGTGGTTTTCGATCTTCGGAACTTCTCAAGATAGTTAGAAACCAGCTTGAGCCGTTAACCGAACAGCAGTTGATGGGCATTTACAATCTGCAGCAGTCTTCCCAGCAGGCTGAGGATGCATTATCACAAGGCATGGATGCATTGCAGCAGTCTCTTTCAGAGACACTTTCTTCCTCCTCTTTAGGGCCCTCTGGTTCTGGAAATGTTGCTGAGTACATGGGCCAAATGGCAATTGCACTGGGCAAGCTGGCCACACTAGAGAATTTCCTTCATCAGGCTGACCTATTGAGGCAACAAACTCTGCAACAGATGCGTCGAATTTTGACCACTTTCCAAGCTGCTCGTGCGCTACTTGTGATAAATGATTACGTTTCACGGCTTAGAGCTCTTAATTCATTATGGTTAGCGTGTCCTAGAGAGTACTAG
Predicted protein sequences of Glyma10g42280
>Glyma10g42280.1   sequence type=predicted peptide   gene model=Glyma10g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSFNTTESESTSPLYSHSPFYHRGNDPSRNPTRFSDLQHSFRQHDAVDLSSSSVFGAKSSNVAVVASNLQCGTFNTNLGCAEFGSIEQRGMFQRGTNSATTVSMGNRHVENWAEDSQHTEDTCTDIDTDDKNQCFSTVSWCNGVGDGALVVVDSQDQSKTKVKAEDQKTVRRLAQNREAARKSRLRKKAYVQQLETSRVRLAQLEQELQRARQQGAFIATGNQGDRSHSAVGNGALAFDMDYARWFDEHQRLINDIRSAINSQMDENELHLLVDGVMAHYDELFRLKSIGAKADVFHILSGMWKTPAERCFIWLGGFRSSELLKIVRNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLSSSSLGPSGSGNVAEYMGQMAIALGKLATLENFLHQADLLRQQTLQQMRRILTTFQAARALLVINDYVSRLRALNSLWLACPREY*






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