SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G25400 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G68440.1). | chr1:8911463-8912329 REVERSE LENGTH=288 | SoyBase | E_val: 4.00E-12 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009625 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to insect | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1LEV9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEV9_SOYBN | SoyBase | E_val: 5.00E-168 | ISS |
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Glyma10g41960 not represented in the dataset |
Glyma10g41960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g25080 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g273200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g41960.1 sequence type=CDS gene model=Glyma10g41960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGCTGCTGCTGCTTACACTTCCTTCCTTCTGCAAATGGGGTCTTTTCTTTCTCACCCTACTCCTCACCGCTTTCATCTTCCGCCTCCGCCAAAACGCACCTCCCTTTCCTCTTATCATCGCTACTTATGATTATAGTGACACCGACGACGACGACGGCATCTCCTCCACGTCGGAGTTTGAAGACGACGATGATGAAGAAGAAGAAAATGAAGAAGACAGAAGGGATGAGTATTTTAGAGTCAGAGGTTCTACCAACGACGAACGACGTCGTAGCATTGCTGATTTCTTGTCTCTTTCAGAAATCGCCAACACCAAAAGCGTCGTTAAGTTATGGGACACCATAGGGTTTGGGCTAGGGTTTGGTTTTGAGCACGTTGATGACCGTTCATCTGATGGAAGCAGAATCGTCTCCGTTTACGACGGGGAGCTTCCTGATCCGGCGGTGGTGGTTTCCGCCGGCGAAAACGCGTCGGGGAATTTAGCGGTGACGATTTGGGACACGCGACTCCGGCGGCGGATACCGGCGATGATGGCGGAGTGGGGACCGAGCCTTGGGAAGACCGTTGGAGTTGTTGAATCCAGCCAAGTACACAAGCTTTACGTCAAAGATGACGGCCGTTACGGGTTTACGGTGGGTGACATGAGAAATGCCAGGTCGCCGTTACAATATGTAACGGATTCACACCTCGATTTGTGGTGGCCAAATTCATTAGTTATGAAAAGTTAA
>Glyma10g41960.1 sequence type=predicted peptide gene model=Glyma10g41960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLLLLTLPSFCKWGLFFLTLLLTAFIFRLRQNAPPFPLIIATYDYSDTDDDDGISSTSEFEDDDDEEEENEEDRRDEYFRVRGSTNDERRRSIADFLSLSEIANTKSVVKLWDTIGFGLGFGFEHVDDRSSDGSRIVSVYDGELPDPAVVVSAGENASGNLAVTIWDTRLRRRIPAMMAEWGPSLGKTVGVVESSQVHKLYVKDDGRYGFTVGDMRNARSPLQYVTDSHLDLWWPNSLVMKS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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