Glyma10g41880 - SoyBase

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Report for Sequence Feature Glyma10g41880

Feature Type:	gene_model
Chromosome:	Gm10
Start:	48872622
stop:	48878953
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g41880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38830	AT	Annotation by Michelle Graham. TAIR10: Cysteinyl-tRNA synthetase, class Ia family protein \| chr5:15545764-15548094 REVERSE LENGTH=511	SoyBase	E_val: 3.00E-160	ISS
GO:0006423	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteinyl-tRNA aminoacylation	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004817	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-tRNA ligase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
PTHR10890	Panther	CYSTEINYL-TRNA SYNTHETASE	JGI		ISS
PF01406	PFAM	tRNA synthetases class I (C) catalytic domain	JGI		ISS
UniRef100_G7IC96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteinyl-tRNA synthetase n=2 Tax=Medicago truncatula RepID=G7IC96_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LEV0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LEV0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g41880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g41880 not represented in the dataset	Glyma10g41880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g41880

Paralog	Evidence	Comments
Glyma20g25160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g41880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g272400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g41880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g41880

Limit To All Plant Sequences

>Glyma10g41880.4   sequence type=transcript   gene model=Glyma10g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTATTTATTTATTATAAAGACAAAGTAAATGAGAGGAGAGAGCGGGTTAAAGAAAAAGAAGAATAAAAATTAGGGCGAAGCGGGTCATAGGTGTGAAGTGAAAGAGAGATTCTGCGTGCAGGAAGAGCGAAGCGAGTGAGTGTGGCAATGGCGGAGGAGCAAGGTGAATTCAGGATTTACAATTCCATGACTCAGCAGAAAGAGATCTTCAAAACCAAAGTCCCCGGCAAGGTTTCCATGTACGTTTGCGGAGTCACTGCCTACGACTTCAGCCATCTCGGTCACGCTCGCGCTGCGGTTTCTTTCGATATCCTCTTCAGGTACCTTAAGCACTTGGGCTATGAGATTACATATGTGCGGAATTTCACTGATGTTGATGACAAGATAATTAAGCGAGCAAATGAGACCGGGGAGGATCCATTGATGTTGAGCAACCGTTTTTGTGATGAATATAATGCTGATATGGCTGATCTCCAGTGCGAGACACCATCTAGGGAACCTCGTGTTTCTGAACACCTTAACGAGATAAAGGACATGATAACCCAGATTATCAACAATGGCTATGCATACGAAGTTGATGGTGATGTTTTTTATGCTGTTGATAAATGCCCAAATTATGGCATGCTATCTGGACAAAGACTAGAACATAATAGAGCTGGAGAACGAGTAGCTGTGGACTCAAGAAAGCGTCACCCAGCTGATTTTGCATTGTGGAAGGCTGCTAAACCAGGTGAGCCTAGCTGGGACAGCCCTTGGGGTCCTGGAAGACCTGGGTGGCACATTGAGTGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATATCCATGGTGGTGGAATTGATTTAATCTTTCCTCATCATGAAAATGAGATTGCACAGAGCTGGGCTGCAGACCATGATAGCCATGTCAGTTATTGGATGCATAATGGGCATGTCACTAATAACAATGAAAAGATGTCAAAATCCTTAGGCAACTTTTTCACTATTCGCCAGATCACTGAGCGTTACCATTCACTTGCTTTGAGGCACTTTTTGATCAGTGCCCATTACAGATCTCCACTAAATTACTCAATTTCACAGCTGGAGAACTCGTCAGATGCTATTTACTATATATTTCAGACTCTTCAAGATTGTAAAGATGCTGTATCACCATTACTTCAAGGGGAAACTGAGAAGAATGAAAAGGTACCTCAAATTAATGAGGCTGCCAAGGAATGTATTAAGAAGTTGAATGTTGAGTTTCAAACAAAAATGTCAGATGACTTGCAGACACCAGTGATACTAACTGGTGCTCTCCAAGAGGCCTTGAAATTTGTGAACACTTCTTTGAAGATGTTGAAGAAGAAAATGCAGAAAAGAGCACAGTTGCAATTGATTCAATCCTTATTGGAGGTTGAGAAAGTAGTTGGAAAAGTTTTGGACGTACTAGGATTGTTGTCTTCTAAATCCTATGCTGAGGTTCTGCAGCAGTTGAAAGATAAGGCATTGAAGAGAGCAGGTCTGACAGAAGATGAAGTGCTACATCTTATAGATGAACGAACTCAAGCTAGGATTAATAAGGATTTCGCCAAAAGTGATAAGATGAGGGCTGATTTGGCTACAAAGGGCATTGCACTTATGGATGTGGGCAACGAAATAACATGGAGACCATGCATCCCGAGTGAGCCACTTGTTGCAGAAGTTGTTCAGAGACCTATAGTTGAGGAAAAGCAGTCTACTCCAGTGAATCAAAAAGTGGAAGAAATACCTGGGGATCGAGAAGGGAATGGCCCACATACAACAACATGAAGGTGGAGTCAATGTGTCCCTCCTTAGCTATGATTAATACGGAAAATGTTATAATTTATCAATACTACACAACGCTTGAAGATTGTATACCAGTTGAAAGATATGTATGACCATACCTAGGTGTCTAGGACGCGAATCATTTTTACACATTTCTCATGTTGGGTCTTCTATGGTCCTGTCTCTGGATTAGTTTAACTGATTTGACAATTGCATGAACGTGCCCCTAACGGAGATTTTGTTTTTTTGATACTCAGATTGGGTATTTAGCTCTTTGTATTACAGAAAGCCGGAATATTTTTTCAAGAATCTAGAGTCTGATTATCTCTTATCTGGTTTGCTCTTGATCG

>Glyma10g41880.5   sequence type=transcript   gene model=Glyma10g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTATTTATTTATTATAAAGACAAAGTAAATGAGAGGAGAGAGCGGGTTAAAGAAAAAGAAGAATAAAAATTAGGGCGAAGCGGGTCATAGGTGTGAAGTGAAAGAGAGATTCTGCGTGCAGGAAGAGCGAAGCGAGTGAGTGTGGCAATGGCGGAGGAGCAAGGTGAATTCAGGATTTACAATTCCATGACTCAGCAGAAAGAGATCTTCAAAACCAAAGTCCCCGGCAAGGTTTCCATGTACGTTTGCGGAGTCACTGCCTACGACTTCAGCCATCTCGGTCACGCTCGCGCTGCGGTTTCTTTCGATATCCTCTTCAGGTACCTTAAGCACTTGGGCTATGAGATTACATATGTGCGGAATTTCACTGATGTTGATGACAAGATAATTAAGCGAGCAAATGAGACCGGGGAGGATCCATTGATGTTGAGCAACCGTTTTTGTGATGAATATAATGCTGATATGGCTGATCTCCAGTGCGAGACACCATCTAGGGAACCTCGTGTTTCTGAACACCTTAACGAGATAAAGGACATGATAACCCAGATTATCAACAATGGCTATGCATACGAAGTTGATGGTGATGTTTTTTATGCTGTTGATAAATGCCCAAATTATGGCATGCTATCTGGACAAAGACTAGAACATAATAGAGCTGGAGAACGAGTAGCTGTGGACTCAAGAAAGCGTCACCCAGCTGATTTTGCATTGTGGAAGGCTGCTAAACCAGGTGAGCCTAGCTGGGACAGCCCTTGGGGTCCTGGAAGACCTGGGTGGCACATTGAGTGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATATCCATGGTGGTGGAATTGATTTAATCTTTCCTCATCATGAAAATGAGATTGCACAGAGCTGGGCTGCAGACCATGATAGCCATGTCAGTTATTGGATGCATAATGGGCATGTCACTAATAACAATGAAAAGATGTCAAAATCCTTAGGCAACTTTTTCACTATTCGCCAGATCACTGAGCGTTACCATTCACTTGCTTTGAGGCACTTTTTGATCAGTGCCCATTACAGATCTCCACTAAATTACTCAATTTCACAGCTGGAGAACTCGTCAGATGCTATTTACTATATATTTCAGACTCTTCAAGATTGTAAAGATGCTGTATCACCATTACTTCAAGGGGAAACTGAGAAGAATGAAAAGGTACCTCAAATTAATGAGGCTGCCAAGGAATGTATTAAGAAGTTGAATGTTGAGTTTCAAACAAAAATGTCAGATGACTTGCAGACACCAGTGATACTAACTGGTGCTCTCCAAGAGGCCTTGAAATTTGTGAACACTTCTTTGAAGATGTTGAAGAAGAAAATGCAGAAAAGAGCACAGTTGCAATTGATTCAATCCTTATTGGAGGTTGAGAAAGTAGTTGGAAAAGTTTTGGACGTACTAGGATTGTTGTCTTCTAAATCCTATGCTGAGGTTCTGCAGCAGTTGAAAGATAAGGCATTGAAGAGAGCAGGTCTGACAGAAGATGAAGTGCTACATCTTATAGATGAACGAACTCAAGCTAGGATTAATAAGGATTTCGCCAAAAGTGATAAGATGAGGGCTGATTTGGCTACAAAGGGCATTGCACTTATGGATGTGGGCAACGAAATAACATGGAGACCATGCATCCCGAGTGAGCCACTTGTTGCAGAAGTTGTTCAGAGACCTATAGTTGAGGAAAAGCAGTCTACTCCAGTGAATCAAAAAGTGGAAGAAATACCTGGGGATCGAGAAGGGAATGGCCCACATACAACAACATGAAGATTGGGTATTTAGCTCTTTGTATTACAGAAAGCCGGAATATTTTTTCAAGAATCTAGAGTCTGATTATCTCTTATCTGGTTTGCTCTTGATCGACGCTACCTTGATTACTTATATTAATTTGTGC

Coding sequences of Glyma10g41880

Limit To All Plant Sequences

>Glyma10g41880.2   sequence type=CDS   gene model=Glyma10g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATCTGGACAAAGACTAGAACATAATAGAGCTGGAGAACGAGTAGCTGTGGACTCAAGAAAGCGTCACCCAGCTGATTTTGCATTGTGGAAGGCTGCTAAACCAGGTGAGCCTAGCTGGGACAGCCCTTGGGGTCCTGGAAGACCTGGGTGGCACATTGAGTGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATATCCATGGTGGTGGAATTGATTTAATCTTTCCTCATCATGAAAATGAGATTGCACAGAGCTGGGCTGCAGACCATGATAGCCATGTCAGTTATTGGATGCATAATGGGCATGTCACTAATAACAATGAAAAGATGTCAAAATCCTTAGGCAACTTTTTCACTATTCGCCAGATCACTGAGCGTTACCATTCACTTGCTTTGAGGCACTTTTTGATCAGTGCCCATTACAGATCTCCACTAAATTACTCAATTTCACAGCTGGAGAACTCGTCAGATGCTATTTACTATATATTTCAGACTCTTCAAGATTGTAAAGATGCTGTATCACCATTACTTCAAGGGGAAACTGAGAAGAATGAAAAGGTACCTCAAATTAATGAGGCTGCCAAGGAATGTATTAAGAAGTTGAATGTTGAGTTTCAAACAAAAATGTCAGATGACTTGCAGACACCAGTGATACTAACTGGTGCTCTCCAAGAGGCCTTGAAATTTGTGAACACTTCTTTGAAGATGTTGAAGAAGAAAATGCAGAAAAGAGCACAGTTGCAATTGATTCAATCCTTATTGGAGGTTGAGAAAGTAGTTGGAAAAGTTTTGGACGTACTAGGATTGTTGTCTTCTAAATCCTATGCTGAGGTTCTGCAGCAGTTGAAAGATAAGGCATTGAAGAGAGCAGGTCTGACAGAAGATGAAGTGCTACATCTTATAGATGAACGAACTCAAGCTAGGATTAATAAGGATTTCGCCAAAAGTGATAAGATGAGGGCTGATTTGGCTACAAAGGGCATTGCACTTATGGATGTGGGCAACGAAATAACATGGAGACCATGCATCCCGAGTGAGCCACTTGTTGCAGAAGTTGTTCAGAGACCTATAGTTGAGGAAAAGCAGTCTACTCCAGTGAATCAAAAAGTGGAAGAAATACCTGGGGATCGAGAAGGGAATGGCCCACATACAACAACATGA

>Glyma10g41880.4   sequence type=CDS   gene model=Glyma10g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATCTGGACAAAGACTAGAACATAATAGAGCTGGAGAACGAGTAGCTGTGGACTCAAGAAAGCGTCACCCAGCTGATTTTGCATTGTGGAAGGCTGCTAAACCAGGTGAGCCTAGCTGGGACAGCCCTTGGGGTCCTGGAAGACCTGGGTGGCACATTGAGTGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATATCCATGGTGGTGGAATTGATTTAATCTTTCCTCATCATGAAAATGAGATTGCACAGAGCTGGGCTGCAGACCATGATAGCCATGTCAGTTATTGGATGCATAATGGGCATGTCACTAATAACAATGAAAAGATGTCAAAATCCTTAGGCAACTTTTTCACTATTCGCCAGATCACTGAGCGTTACCATTCACTTGCTTTGAGGCACTTTTTGATCAGTGCCCATTACAGATCTCCACTAAATTACTCAATTTCACAGCTGGAGAACTCGTCAGATGCTATTTACTATATATTTCAGACTCTTCAAGATTGTAAAGATGCTGTATCACCATTACTTCAAGGGGAAACTGAGAAGAATGAAAAGGTACCTCAAATTAATGAGGCTGCCAAGGAATGTATTAAGAAGTTGAATGTTGAGTTTCAAACAAAAATGTCAGATGACTTGCAGACACCAGTGATACTAACTGGTGCTCTCCAAGAGGCCTTGAAATTTGTGAACACTTCTTTGAAGATGTTGAAGAAGAAAATGCAGAAAAGAGCACAGTTGCAATTGATTCAATCCTTATTGGAGGTTGAGAAAGTAGTTGGAAAAGTTTTGGACGTACTAGGATTGTTGTCTTCTAAATCCTATGCTGAGGTTCTGCAGCAGTTGAAAGATAAGGCATTGAAGAGAGCAGGTCTGACAGAAGATGAAGTGCTACATCTTATAGATGAACGAACTCAAGCTAGGATTAATAAGGATTTCGCCAAAAGTGATAAGATGAGGGCTGATTTGGCTACAAAGGGCATTGCACTTATGGATGTGGGCAACGAAATAACATGGAGACCATGCATCCCGAGTGAGCCACTTGTTGCAGAAGTTGTTCAGAGACCTATAGTTGAGGAAAAGCAGTCTACTCCAGTGAATCAAAAAGTGGAAGAAATACCTGGGGATCGAGAAGGGAATGGCCCACATACAACAACATGA

>Glyma10g41880.5   sequence type=CDS   gene model=Glyma10g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATCTGGACAAAGACTAGAACATAATAGAGCTGGAGAACGAGTAGCTGTGGACTCAAGAAAGCGTCACCCAGCTGATTTTGCATTGTGGAAGGCTGCTAAACCAGGTGAGCCTAGCTGGGACAGCCCTTGGGGTCCTGGAAGACCTGGGTGGCACATTGAGTGCAGTGCAATGAGTGCTTGTTATTTAACTCATAAATTTGATATCCATGGTGGTGGAATTGATTTAATCTTTCCTCATCATGAAAATGAGATTGCACAGAGCTGGGCTGCAGACCATGATAGCCATGTCAGTTATTGGATGCATAATGGGCATGTCACTAATAACAATGAAAAGATGTCAAAATCCTTAGGCAACTTTTTCACTATTCGCCAGATCACTGAGCGTTACCATTCACTTGCTTTGAGGCACTTTTTGATCAGTGCCCATTACAGATCTCCACTAAATTACTCAATTTCACAGCTGGAGAACTCGTCAGATGCTATTTACTATATATTTCAGACTCTTCAAGATTGTAAAGATGCTGTATCACCATTACTTCAAGGGGAAACTGAGAAGAATGAAAAGGTACCTCAAATTAATGAGGCTGCCAAGGAATGTATTAAGAAGTTGAATGTTGAGTTTCAAACAAAAATGTCAGATGACTTGCAGACACCAGTGATACTAACTGGTGCTCTCCAAGAGGCCTTGAAATTTGTGAACACTTCTTTGAAGATGTTGAAGAAGAAAATGCAGAAAAGAGCACAGTTGCAATTGATTCAATCCTTATTGGAGGTTGAGAAAGTAGTTGGAAAAGTTTTGGACGTACTAGGATTGTTGTCTTCTAAATCCTATGCTGAGGTTCTGCAGCAGTTGAAAGATAAGGCATTGAAGAGAGCAGGTCTGACAGAAGATGAAGTGCTACATCTTATAGATGAACGAACTCAAGCTAGGATTAATAAGGATTTCGCCAAAAGTGATAAGATGAGGGCTGATTTGGCTACAAAGGGCATTGCACTTATGGATGTGGGCAACGAAATAACATGGAGACCATGCATCCCGAGTGAGCCACTTGTTGCAGAAGTTGTTCAGAGACCTATAGTTGAGGAAAAGCAGTCTACTCCAGTGAATCAAAAAGTGGAAGAAATACCTGGGGATCGAGAAGGGAATGGCCCACATACAACAACATGA

Predicted protein sequences of Glyma10g41880

Limit To All Plant Sequences

>Glyma10g41880.2   sequence type=predicted peptide   gene model=Glyma10g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSGQRLEHNRAGERVAVDSRKRHPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLTHKFDIHGGGIDLIFPHHENEIAQSWAADHDSHVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHSLALRHFLISAHYRSPLNYSISQLENSSDAIYYIFQTLQDCKDAVSPLLQGETEKNEKVPQINEAAKECIKKLNVEFQTKMSDDLQTPVILTGALQEALKFVNTSLKMLKKKMQKRAQLQLIQSLLEVEKVVGKVLDVLGLLSSKSYAEVLQQLKDKALKRAGLTEDEVLHLIDERTQARINKDFAKSDKMRADLATKGIALMDVGNEITWRPCIPSEPLVAEVVQRPIVEEKQSTPVNQKVEEIPGDREGNGPHTTT*

>Glyma10g41880.4   sequence type=predicted peptide   gene model=Glyma10g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSGQRLEHNRAGERVAVDSRKRHPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLTHKFDIHGGGIDLIFPHHENEIAQSWAADHDSHVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHSLALRHFLISAHYRSPLNYSISQLENSSDAIYYIFQTLQDCKDAVSPLLQGETEKNEKVPQINEAAKECIKKLNVEFQTKMSDDLQTPVILTGALQEALKFVNTSLKMLKKKMQKRAQLQLIQSLLEVEKVVGKVLDVLGLLSSKSYAEVLQQLKDKALKRAGLTEDEVLHLIDERTQARINKDFAKSDKMRADLATKGIALMDVGNEITWRPCIPSEPLVAEVVQRPIVEEKQSTPVNQKVEEIPGDREGNGPHTTT*

>Glyma10g41880.5   sequence type=predicted peptide   gene model=Glyma10g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSGQRLEHNRAGERVAVDSRKRHPADFALWKAAKPGEPSWDSPWGPGRPGWHIECSAMSACYLTHKFDIHGGGIDLIFPHHENEIAQSWAADHDSHVSYWMHNGHVTNNNEKMSKSLGNFFTIRQITERYHSLALRHFLISAHYRSPLNYSISQLENSSDAIYYIFQTLQDCKDAVSPLLQGETEKNEKVPQINEAAKECIKKLNVEFQTKMSDDLQTPVILTGALQEALKFVNTSLKMLKKKMQKRAQLQLIQSLLEVEKVVGKVLDVLGLLSSKSYAEVLQQLKDKALKRAGLTEDEVLHLIDERTQARINKDFAKSDKMRADLATKGIALMDVGNEITWRPCIPSEPLVAEVVQRPIVEEKQSTPVNQKVEEIPGDREGNGPHTTT*

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