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Report for Sequence Feature Glyma10g41770
Feature Type: gene_model
Chromosome: Gm10
Start: 48785140
stop: 48790125
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g41770
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G68410 AT
Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr1:25650262-25652255 REVERSE LENGTH=436
SoyBase E_val: 0 ISS
GO:0005575 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cellular component
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0004722 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity
SoyBase N/A ISS
KOG0698
KOG
Serine/threonine protein phosphatase
JGI ISS
PTHR13832 Panther
PROTEIN PHOSPHATASE 2C
JGI ISS
PTHR13832:SF148 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00481 PFAM
Protein phosphatase 2C
JGI ISS
UniRef100_B9SLZ1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9SLZ1_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LEU0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEU0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g41770
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g41770
Paralog Evidence Comments
Glyma20g25360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g41770 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g271500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g41770
Transcripts of Glyma10g41770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g41770.2 sequence type=transcript gene model=Glyma10g41770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGTAGAGTGAGGTGTGTAACTGCAAAGCTGCAGCGCACTTTCTCTCTGAACCAAACAAACAAGAAGGCATCATGCCATCCCAGAAACAAATGCAAACCCCTCCAACACCTCTCCCTTTCAATTCACCAATTCCCATACTAACATAACATTTCTTTATTTATTCACAGATCATAACAGTTATAAACACATTGCTTAAAGAACTTCAAATACCAATTTTCTTTTGTCGGAAGCAACAAAATAATACTGATTATTTCACCTCCAACTCCAAATCTGTTTGTTTCTTGCACACAATTTGCCGTGGTCCCCACCACAAAGTGTTTGTTTGTTTCCTCAATTCAATTTTTCCTTGTCCAAATCCAAGGAGATTAGATTATGAAACCCATTGTCACTTCGTTTGCGGAAATTGGTCTCCTGCTTAGGTTGTATCATCCATATCTGCATCTGGTTTTGCGCGTGGTGTACACCCAGACATTCTCGCTGATCTAGTTGGGATAAAGTGTCTCTTTATATTGCCAAGAAGAGTTTACTGTGTGGGAGGAGTGTTTTATGTTTGAGGTCTTATATACTTGTGAGAAAAGAGCTTTTTGGATTTGAGTAGTAGGGTGAAGGTTCTTTGGTGGGGCTAGATATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGGTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTAATTAAGACTGATTGTCAACGAGTGCCTGGGAACTCTTCATCTTCCTTTTCTGTATATGCGGTTTTTGATGGGCATAATGGAAATGCTGCTGCCATTTTTACTAGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGGCTTGGACGAGATGAGTGGTTACAAGCTTTACCAAGGGCACTGGTTGCTGGCTTTGTTAAGACTGACAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACATTCGTAATAGTGGATAGGTGGACTGTGACTGTTGCATCAGTTGGAGATTCCCGTTGTATACTAGATACCCAGGGTGGTGCTGTTACCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATTGTTGGTGGGGCTGAGATTGGTCCCCTTCGTTGCTGGCCAGGAGGTCTATGCCTTTCTAGGTCAATAGGTGACATGGATGTTGGGGAGTTCATAGTTCCAATACCATATGTCAAACAAGTAAAGCTGTCAAAAGCTGGTGGGAGGCTTGTAATTGCCTCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATTTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACGAGAGGGTTAAAGGACGATACAACTTGCATAGTAGTTGACATTATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCCAAAACGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGGTCCCGTGATTCTGCCAGTAAGCTGTCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCCGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACTCAGGGCAATCAACATCTGGCATTTTTGTCTGTGCTGTATGTCAAGTTGATCTTGCTCCAAGTGAGGGCATCTCTGTCCACGCAGGTTCCATTTTCTCCACCAGCTCCAAACCCTGGGAAGGTCCTTTTCTATGTTTTGATTGCCGTGATAAGAAGGATGCTATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTGTCATAGGCTCAAAATTGATTTCCTGTTATAGTATTCTTTATGCTATCTTTGGCCATTTTTGTATTCACAATTTTTATAGGCAAAAATTAATTGATTGAATCTCACTATCTAGCAGCAACAGCTGTATATGTGAATTGTGATATCCACGAATTCATCTAAAATGGGGCCATTGCATTTGAGTAGCAAATTAAAACTGGGAGAGAGTGCCTGGAATGGGTTTTTGGGCGGCTGAAGATTCTTCATCTCTGATTTGGATGGTTAAGATTGTTGCCGGGTAGATTCTTTTGTATAGTAGTTTATGTTGCTTAACTTACCACAAAAGTGGGTATTCTCTTGATTAAGTATGCCTCCCCAAATTCTGTATATAAATTTCCATGGACCTTTTCTACCCCTGGGGATTGGAAGCTTCAAATCTCTACTATGGATTGAGAAATCAATTCATCTAAATTTAGAAATTGCTTGTTAAATACTGTATGTTTCCTTTTTCCCGTGTTATTTTGGTGTCACTCTCCTCTTTGTCCTTTACAAATAACTGGAA
Coding sequences of Glyma10g41770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g41770.1 sequence type=CDS gene model=Glyma10g41770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGGTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTAATTAAGACTGATTGTCAACGAGTGCCTGGGAACTCTTCATCTTCCTTTTCTGTATATGCGGTTTTTGATGGGCATAATGGAAATGCTGCTGCCATTTTTACTAGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGGCTTGGACGAGATGAGTGGTTACAAGCTTTACCAAGGGCACTGGTTGCTGGCTTTGTTAAGACTGACAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACATTCGTAATAGTGGATAGGTGGACTGTGACTGTTGCATCAGTTGGAGATTCCCGTTGTATACTAGATACCCAGGGTGGTGCTGTTACCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATTGTTGGTGGGGCTGAGATTGGTCCCCTTCGTTGCTGGCCAGGAGGTCTATGCCTTTCTAGGTCAATAGGTGACATGGATGTTGGGGAGTTCATAGTTCCAATACCATATGTCAAACAAGTAAAGCTGTCAAAAGCTGGTGGGAGGCTTGTAATTGCCTCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATTTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACGAGAGGGTTAAAGGACGATACAACTTGCATAGTAGTTGACATTATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCCAAAACGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGGTCCCGTGATTCTGCCAGTAAGCTGTCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCCGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACTCAGGGCAATCAACATCTGGCATTTTTGTCTGTGCTGTATGTCAAGTTGATCTTGCTCCAAGTGAGGGCATCTCTGTCCACGCAGGTTCCATTTTCTCCACCAGCTCCAAACCCTGGGAAGGTCCTTTTCTATGTTTTGATTGCCGTGATAAGAAGGATGCTATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTGTCATAG
>Glyma10g41770.2 sequence type=CDS gene model=Glyma10g41770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGGTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTAATTAAGACTGATTGTCAACGAGTGCCTGGGAACTCTTCATCTTCCTTTTCTGTATATGCGGTTTTTGATGGGCATAATGGAAATGCTGCTGCCATTTTTACTAGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGGCTTGGACGAGATGAGTGGTTACAAGCTTTACCAAGGGCACTGGTTGCTGGCTTTGTTAAGACTGACAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACATTCGTAATAGTGGATAGGTGGACTGTGACTGTTGCATCAGTTGGAGATTCCCGTTGTATACTAGATACCCAGGGTGGTGCTGTTACCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATTGTTGGTGGGGCTGAGATTGGTCCCCTTCGTTGCTGGCCAGGAGGTCTATGCCTTTCTAGGTCAATAGGTGACATGGATGTTGGGGAGTTCATAGTTCCAATACCATATGTCAAACAAGTAAAGCTGTCAAAAGCTGGTGGGAGGCTTGTAATTGCCTCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATTTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACGAGAGGGTTAAAGGACGATACAACTTGCATAGTAGTTGACATTATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCCAAAACGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGGTCCCGTGATTCTGCCAGTAAGCTGTCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCCGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACTCAGGGCAATCAACATCTGGCATTTTTGTCTGTGCTGTATGTCAAGTTGATCTTGCTCCAAGTGAGGGCATCTCTGTCCACGCAGGTTCCATTTTCTCCACCAGCTCCAAACCCTGGGAAGGTCCTTTTCTATGTTTTGATTGCCGTGATAAGAAGGATGCTATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTGTCATAG
Predicted protein sequences of Glyma10g41770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g41770.1 sequence type=predicted peptide gene model=Glyma10g41770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRVGHAAQSKKGEDYFLIKTDCQRVPGNSSSSFSVYAVFDGHNGNAAAIFTREHLLNHVLGALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLVIASDGIWDALSSEMAAKFCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPPKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNSGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWEGPFLCFDCRDKKDAMEGKRPSGVKVS*
>Glyma10g41770.2 sequence type=predicted peptide gene model=Glyma10g41770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRVGHAAQSKKGEDYFLIKTDCQRVPGNSSSSFSVYAVFDGHNGNAAAIFTREHLLNHVLGALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLVIASDGIWDALSSEMAAKFCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPPKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNSGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWEGPFLCFDCRDKKDAMEGKRPSGVKVS*