SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research




Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g41770): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g41770): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma10g41770

Feature Type:gene_model
Chromosome:Gm10
Start:48785140
stop:48790125
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G68410AT Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein | chr1:25650262-25652255 REVERSE LENGTH=436 SoyBaseE_val: 0ISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004722GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity SoyBaseN/AISS
KOG0698 KOG Serine/threonine protein phosphatase JGI ISS
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI ISS
PTHR13832:SF148Panther SUBFAMILY NOT NAMED JGI ISS
PF00481PFAM Protein phosphatase 2C JGI ISS
UniRef100_B9SLZ1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9SLZ1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1LEU0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEU0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g41770 not represented in the dataset

Glyma10g41770 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g25360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g271500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g41770.2   sequence type=transcript   gene model=Glyma10g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGTAGAGTGAGGTGTGTAACTGCAAAGCTGCAGCGCACTTTCTCTCTGAACCAAACAAACAAGAAGGCATCATGCCATCCCAGAAACAAATGCAAACCCCTCCAACACCTCTCCCTTTCAATTCACCAATTCCCATACTAACATAACATTTCTTTATTTATTCACAGATCATAACAGTTATAAACACATTGCTTAAAGAACTTCAAATACCAATTTTCTTTTGTCGGAAGCAACAAAATAATACTGATTATTTCACCTCCAACTCCAAATCTGTTTGTTTCTTGCACACAATTTGCCGTGGTCCCCACCACAAAGTGTTTGTTTGTTTCCTCAATTCAATTTTTCCTTGTCCAAATCCAAGGAGATTAGATTATGAAACCCATTGTCACTTCGTTTGCGGAAATTGGTCTCCTGCTTAGGTTGTATCATCCATATCTGCATCTGGTTTTGCGCGTGGTGTACACCCAGACATTCTCGCTGATCTAGTTGGGATAAAGTGTCTCTTTATATTGCCAAGAAGAGTTTACTGTGTGGGAGGAGTGTTTTATGTTTGAGGTCTTATATACTTGTGAGAAAAGAGCTTTTTGGATTTGAGTAGTAGGGTGAAGGTTCTTTGGTGGGGCTAGATATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGGTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTAATTAAGACTGATTGTCAACGAGTGCCTGGGAACTCTTCATCTTCCTTTTCTGTATATGCGGTTTTTGATGGGCATAATGGAAATGCTGCTGCCATTTTTACTAGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGGCTTGGACGAGATGAGTGGTTACAAGCTTTACCAAGGGCACTGGTTGCTGGCTTTGTTAAGACTGACAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACATTCGTAATAGTGGATAGGTGGACTGTGACTGTTGCATCAGTTGGAGATTCCCGTTGTATACTAGATACCCAGGGTGGTGCTGTTACCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATTGTTGGTGGGGCTGAGATTGGTCCCCTTCGTTGCTGGCCAGGAGGTCTATGCCTTTCTAGGTCAATAGGTGACATGGATGTTGGGGAGTTCATAGTTCCAATACCATATGTCAAACAAGTAAAGCTGTCAAAAGCTGGTGGGAGGCTTGTAATTGCCTCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATTTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACGAGAGGGTTAAAGGACGATACAACTTGCATAGTAGTTGACATTATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCCAAAACGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGGTCCCGTGATTCTGCCAGTAAGCTGTCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCCGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACTCAGGGCAATCAACATCTGGCATTTTTGTCTGTGCTGTATGTCAAGTTGATCTTGCTCCAAGTGAGGGCATCTCTGTCCACGCAGGTTCCATTTTCTCCACCAGCTCCAAACCCTGGGAAGGTCCTTTTCTATGTTTTGATTGCCGTGATAAGAAGGATGCTATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTGTCATAGGCTCAAAATTGATTTCCTGTTATAGTATTCTTTATGCTATCTTTGGCCATTTTTGTATTCACAATTTTTATAGGCAAAAATTAATTGATTGAATCTCACTATCTAGCAGCAACAGCTGTATATGTGAATTGTGATATCCACGAATTCATCTAAAATGGGGCCATTGCATTTGAGTAGCAAATTAAAACTGGGAGAGAGTGCCTGGAATGGGTTTTTGGGCGGCTGAAGATTCTTCATCTCTGATTTGGATGGTTAAGATTGTTGCCGGGTAGATTCTTTTGTATAGTAGTTTATGTTGCTTAACTTACCACAAAAGTGGGTATTCTCTTGATTAAGTATGCCTCCCCAAATTCTGTATATAAATTTCCATGGACCTTTTCTACCCCTGGGGATTGGAAGCTTCAAATCTCTACTATGGATTGAGAAATCAATTCATCTAAATTTAGAAATTGCTTGTTAAATACTGTATGTTTCCTTTTTCCCGTGTTATTTTGGTGTCACTCTCCTCTTTGTCCTTTACAAATAACTGGAA

>Glyma10g41770.1   sequence type=CDS   gene model=Glyma10g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGGTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTAATTAAGACTGATTGTCAACGAGTGCCTGGGAACTCTTCATCTTCCTTTTCTGTATATGCGGTTTTTGATGGGCATAATGGAAATGCTGCTGCCATTTTTACTAGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGGCTTGGACGAGATGAGTGGTTACAAGCTTTACCAAGGGCACTGGTTGCTGGCTTTGTTAAGACTGACAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACATTCGTAATAGTGGATAGGTGGACTGTGACTGTTGCATCAGTTGGAGATTCCCGTTGTATACTAGATACCCAGGGTGGTGCTGTTACCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATTGTTGGTGGGGCTGAGATTGGTCCCCTTCGTTGCTGGCCAGGAGGTCTATGCCTTTCTAGGTCAATAGGTGACATGGATGTTGGGGAGTTCATAGTTCCAATACCATATGTCAAACAAGTAAAGCTGTCAAAAGCTGGTGGGAGGCTTGTAATTGCCTCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATTTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACGAGAGGGTTAAAGGACGATACAACTTGCATAGTAGTTGACATTATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCCAAAACGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGGTCCCGTGATTCTGCCAGTAAGCTGTCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCCGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACTCAGGGCAATCAACATCTGGCATTTTTGTCTGTGCTGTATGTCAAGTTGATCTTGCTCCAAGTGAGGGCATCTCTGTCCACGCAGGTTCCATTTTCTCCACCAGCTCCAAACCCTGGGAAGGTCCTTTTCTATGTTTTGATTGCCGTGATAAGAAGGATGCTATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTGTCATAG

>Glyma10g41770.2   sequence type=CDS   gene model=Glyma10g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCTGGTGAAGGGAGGCGGCGTCATCATGATCTTGTGCCTCTTGCTGCATTGCTCAAGAGAGAGATGAAGAGTGAGAAGATGGAGAAGCCTACTGTGAGGGTTGGACATGCAGCTCAGTCCAAGAAAGGGGAGGATTACTTTCTAATTAAGACTGATTGTCAACGAGTGCCTGGGAACTCTTCATCTTCCTTTTCTGTATATGCGGTTTTTGATGGGCATAATGGAAATGCTGCTGCCATTTTTACTAGGGAGCATTTGTTAAATCATGTGTTGGGTGCTCTTCCTCGAGGGCTTGGACGAGATGAGTGGTTACAAGCTTTACCAAGGGCACTGGTTGCTGGCTTTGTTAAGACTGACAAGGAATTTCAGAGCAGAGGAGAAACTTCTGGAACCACAGCCACATTCGTAATAGTGGATAGGTGGACTGTGACTGTTGCATCAGTTGGAGATTCCCGTTGTATACTAGATACCCAGGGTGGTGCTGTTACCTCCTTAACTGTTGATCACAGACTTGAAGAGAATATTGAAGAGAGGGAACGTGTAACTGCTAGTGGAGGTGAAGTTGGGAGACTTAGCATTGTTGGTGGGGCTGAGATTGGTCCCCTTCGTTGCTGGCCAGGAGGTCTATGCCTTTCTAGGTCAATAGGTGACATGGATGTTGGGGAGTTCATAGTTCCAATACCATATGTCAAACAAGTAAAGCTGTCAAAAGCTGGTGGGAGGCTTGTAATTGCCTCTGATGGCATATGGGATGCTCTATCATCAGAAATGGCTGCAAAATTTTGCCGTGGTTTGCCTGCTGAACTTGCTGCTATGCAGGTTGTCAAGGAAGCACTAAGAACGAGAGGGTTAAAGGACGATACAACTTGCATAGTAGTTGACATTATCCCACCTGATAATGAATTGCCACCAACACCTCCCCCCCCAAAACGGAACAAGCTGAGAGATCTTCTTTCCTTCAGGAAGAGGTCCCGTGATTCTGCCAGTAAGCTGTCAAAAAAGCTTTCAGCTATAAATATAGTGGAGGAACTGTTTGAAGAAGGATCCGCAATGCTTGCTGAAAGATTAGGAAATGATGACAACTTGAACTCAGGGCAATCAACATCTGGCATTTTTGTCTGTGCTGTATGTCAAGTTGATCTTGCTCCAAGTGAGGGCATCTCTGTCCACGCAGGTTCCATTTTCTCCACCAGCTCCAAACCCTGGGAAGGTCCTTTTCTATGTTTTGATTGCCGTGATAAGAAGGATGCTATGGAAGGAAAACGTCCAAGTGGAGTTAAGGTGTCATAG

>Glyma10g41770.1   sequence type=predicted peptide   gene model=Glyma10g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRVGHAAQSKKGEDYFLIKTDCQRVPGNSSSSFSVYAVFDGHNGNAAAIFTREHLLNHVLGALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLVIASDGIWDALSSEMAAKFCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPPKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNSGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWEGPFLCFDCRDKKDAMEGKRPSGVKVS*

>Glyma10g41770.2   sequence type=predicted peptide   gene model=Glyma10g41770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASGEGRRRHHDLVPLAALLKREMKSEKMEKPTVRVGHAAQSKKGEDYFLIKTDCQRVPGNSSSSFSVYAVFDGHNGNAAAIFTREHLLNHVLGALPRGLGRDEWLQALPRALVAGFVKTDKEFQSRGETSGTTATFVIVDRWTVTVASVGDSRCILDTQGGAVTSLTVDHRLEENIEERERVTASGGEVGRLSIVGGAEIGPLRCWPGGLCLSRSIGDMDVGEFIVPIPYVKQVKLSKAGGRLVIASDGIWDALSSEMAAKFCRGLPAELAAMQVVKEALRTRGLKDDTTCIVVDIIPPDNELPPTPPPPKRNKLRDLLSFRKRSRDSASKLSKKLSAINIVEELFEEGSAMLAERLGNDDNLNSGQSTSGIFVCAVCQVDLAPSEGISVHAGSIFSTSSKPWEGPFLCFDCRDKKDAMEGKRPSGVKVS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo