Glyma10g41400 - SoyBase

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Report for Sequence Feature Glyma10g41400

Feature Type:	gene_model
Chromosome:	Gm10
Start:	48469561
stop:	48472681
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g41400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01110	AT	Annotation by Michelle Graham. TAIR10: Sec-independent periplasmic protein translocase \| chr2:83786-85088 REVERSE LENGTH=340	SoyBase	E_val: 2.00E-151	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009567	GO-bp	Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0035304	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation	SoyBase	N/A	ISS
GO:0042793	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0031361	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to thylakoid membrane	SoyBase	N/A	ISS
GO:0033281	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: TAT protein transport complex	SoyBase	N/A	ISS
GO:0043235	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: receptor complex	SoyBase	N/A	ISS
GO:0009977	GO-mf	Annotation by Michelle Graham. GO Molecular Function: proton motive force dependent protein transmembrane transporter activity	SoyBase	N/A	ISS
PF00902	PFAM	Sec-independent protein translocase protein (TatC)	JGI		ISS
UniRef100_I1LEQ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEQ3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q94G17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sec-independent protein translocase protein TATC, chloroplastic n=1 Tax=Pisum sativum RepID=TATC_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g41400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g41400 not represented in the dataset	Glyma10g41400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g41400

Paralog	Evidence	Comments
Glyma20g25860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g41400 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g268000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g41400

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g41400

Limit To All Plant Sequences

>Glyma10g41400.2   sequence type=transcript   gene model=Glyma10g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTAAGGGATCTAATATTACTATCGAGACCAATTACTTGTTAATAGTTGAAAGATTTTGTCTAAAACATGTGTTGTAGTTTATGCGAAAACTAATAGTTATATAGTGAGGAAGAGGTTGGAAGTGTAAAATATCAGGCACATAACCAAGATCGAAGGGAAGGAAACCGTATCCAAGCGTGTGACAGTCAAAAGAAAAGACGTTACAGCATAGCATGGGATTGATAAGCACCAGTGTTCCCACGAACATCGTTCCTCAATTCGGGTCTCTCCGAACATCCATCCGGGTCGGAAACCCAAACCCTTCCGGGTTGAGTTTCCCACGGAAGAGGAATAACAGTTTTGTTTGCTTGGCCGTCGATGACGAGCTGAGACAGAAGCAGCAAGACTTGAGTACTAGCGCCACTGGGCTGGGCTCCGCCCTTGAAGAAAGGCCCGATCTTTTTGAGAGTACAGCTGAAGAAACGCAGGGAAATTTTGGGCAAGATGGTGACCGAGGTGCTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCCGATGACAAAGAAATGAGCATATTTGATCATCTTGAAGAGCTGCGACAGAGAATCTTTGTATCAGTCCTGGCAGTTGGAGCAAGCATTTTGGGATGCTTTGCATTTTCAAAAGAACTAATAATGATTCTTGAAGCTCCTGTTAAAACACAGGGTGTAAGATTTCTTCAGCTAGCTCCTGGTGAATTTTTCTTCACAACTTTAAAGGTGTCTGGGTACTGTGGCCTTCTCTTGGGAAGTCCTGTCATCCTCTATGAAGTCATAGCTTTTGTACTTCCAGGACTTACAAAATCTGAAAGAAGGTTTCTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTATGCCGGAATAACTTTCTCCTACTTAGTTCTGACACCTGCAGCATTAAATTTCTTTGTTACCTACGCTGAAGGTGCTGTTGAATCATTATGGTCCATCGATCAATACTTTGAATTTGTTCTGGTGCTTATGTTCAGTACAGGCTTATCTTTCCAGGTACCTGTCATACAATTTCTATTGGGACAACTTGGACTGGTGTCTGGAGACCAGATGCTATCAATTTGGAGGTATGTTGTGGTTGGTGCCGTAGTGGCAGCTGCTATAGTTACGCCATCTACTGATCCTCTCACTCAAATTCTTCTAGCGGCACCCTTATTGGGTCTTTACTTAGGTGGCGCATGGATGGTCAAGCTTACTGGACGGTGACCCTAGCCGCATCTTAATGATGTGCCAGAATTTCAATATGAACAGATGTTAATGTACATTCACATAGCAATCTAGTGTATATTTTTACACGTACCAGAGCACTGTTCTTCTGTATTCTAATTGATTTACCAGTCATTCCCAAATATCGTCGTGTCTTGGTATTTGGAAGTATTTCTTTGAAATTCGTCCCTACATTCAGTTCATTGCACGTTTTAAATTAAAATCATG

Coding sequences of Glyma10g41400

Limit To All Plant Sequences

>Glyma10g41400.1   sequence type=CDS   gene model=Glyma10g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTGATAAGCACCAGTGTTCCCACGAACATCGTTCCTCAATTCGGGTCTCTCCGAACATCCATCCGGGTCGGAAACCCAAACCCTTCCGGGTTGAGTTTCCCACGGAAGAGGAATAACAGTTTTGTTTGCTTGGCCGTCGATGACGAGCTGAGACAGAAGCAGCAAGACTTGAGTACTAGCGCCACTGGGCTGGGCTCCGCCCTTGAAGAAAGGCCCGAAAATGCAGATCTTTTTGAGAGTACAGCTGAAGAAACGCAGGGAAATTTTGGGCAAGATGGTGACCGAGGTGCTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCCGATGACAAAGAAATGAGCATATTTGATCATCTTGAAGAGCTGCGACAGAGAATCTTTGTATCAGTCCTGGCAGTTGGAGCAAGCATTTTGGGATGCTTTGCATTTTCAAAAGAACTAATAATGATTCTTGAAGCTCCTGTTAAAACACAGGGTGTAAGATTTCTTCAGCTAGCTCCTGGTGAATTTTTCTTCACAACTTTAAAGGTGTCTGGGTACTGTGGCCTTCTCTTGGGAAGTCCTGTCATCCTCTATGAAGTCATAGCTTTTGTACTTCCAGGACTTACAAAATCTGAAAGAAGGTTTCTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTATGCCGGAATAACTTTCTCCTACTTAGTTCTGACACCTGCAGCATTAAATTTCTTTGTTACCTACGCTGAAGGTGCTGTTGAATCATTATGGTCCATCGATCAATACTTTGAATTTGTTCTGGTGCTTATGTTCAGTACAGGCTTATCTTTCCAGGTACCTGTCATACAATTTCTATTGGGACAACTTGGACTGGTGTCTGGAGACCAGATGCTATCAATTTGGAGGTATGTTGTGGTTGGTGCCGTAGTGGCAGCTGCTATAGTTACGCCATCTACTGATCCTCTCACTCAAATTCTTCTAGCGGCACCCTTATTGGGTCTTTACTTAGGTGGCGCATGGATGGTCAAGCTTACTGGACGGTGA

>Glyma10g41400.2   sequence type=CDS   gene model=Glyma10g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTGATAAGCACCAGTGTTCCCACGAACATCGTTCCTCAATTCGGGTCTCTCCGAACATCCATCCGGGTCGGAAACCCAAACCCTTCCGGGTTGAGTTTCCCACGGAAGAGGAATAACAGTTTTGTTTGCTTGGCCGTCGATGACGAGCTGAGACAGAAGCAGCAAGACTTGAGTACTAGCGCCACTGGGCTGGGCTCCGCCCTTGAAGAAAGGCCCGATCTTTTTGAGAGTACAGCTGAAGAAACGCAGGGAAATTTTGGGCAAGATGGTGACCGAGGTGCTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCCGATGACAAAGAAATGAGCATATTTGATCATCTTGAAGAGCTGCGACAGAGAATCTTTGTATCAGTCCTGGCAGTTGGAGCAAGCATTTTGGGATGCTTTGCATTTTCAAAAGAACTAATAATGATTCTTGAAGCTCCTGTTAAAACACAGGGTGTAAGATTTCTTCAGCTAGCTCCTGGTGAATTTTTCTTCACAACTTTAAAGGTGTCTGGGTACTGTGGCCTTCTCTTGGGAAGTCCTGTCATCCTCTATGAAGTCATAGCTTTTGTACTTCCAGGACTTACAAAATCTGAAAGAAGGTTTCTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTATGCCGGAATAACTTTCTCCTACTTAGTTCTGACACCTGCAGCATTAAATTTCTTTGTTACCTACGCTGAAGGTGCTGTTGAATCATTATGGTCCATCGATCAATACTTTGAATTTGTTCTGGTGCTTATGTTCAGTACAGGCTTATCTTTCCAGGTACCTGTCATACAATTTCTATTGGGACAACTTGGACTGGTGTCTGGAGACCAGATGCTATCAATTTGGAGGTATGTTGTGGTTGGTGCCGTAGTGGCAGCTGCTATAGTTACGCCATCTACTGATCCTCTCACTCAAATTCTTCTAGCGGCACCCTTATTGGGTCTTTACTTAGGTGGCGCATGGATGGTCAAGCTTACTGGACGGTGA

Predicted protein sequences of Glyma10g41400

Limit To All Plant Sequences

>Glyma10g41400.1   sequence type=predicted peptide   gene model=Glyma10g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLISTSVPTNIVPQFGSLRTSIRVGNPNPSGLSFPRKRNNSFVCLAVDDELRQKQQDLSTSATGLGSALEERPENADLFESTAEETQGNFGQDGDRGAIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGASILGCFAFSKELIMILEAPVKTQGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEVIAFVLPGLTKSERRFLGPIVLGSSVLFYAGITFSYLVLTPAALNFFVTYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVSGDQMLSIWRYVVVGAVVAAAIVTPSTDPLTQILLAAPLLGLYLGGAWMVKLTGR*

>Glyma10g41400.2   sequence type=predicted peptide   gene model=Glyma10g41400   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLISTSVPTNIVPQFGSLRTSIRVGNPNPSGLSFPRKRNNSFVCLAVDDELRQKQQDLSTSATGLGSALEERPDLFESTAEETQGNFGQDGDRGAIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFVSVLAVGASILGCFAFSKELIMILEAPVKTQGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPVILYEVIAFVLPGLTKSERRFLGPIVLGSSVLFYAGITFSYLVLTPAALNFFVTYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQLGLVSGDQMLSIWRYVVVGAVVAAAIVTPSTDPLTQILLAAPLLGLYLGGAWMVKLTGR*

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