SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01275 | AT | Annotation by Michelle Graham. TAIR10: RING/FYVE/PHD zinc finger superfamily protein | chr2:142610-143809 REVERSE LENGTH=259 | SoyBase | E_val: 9.00E-93 | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR23012 | Panther | MEMBRANE ASSOCIATED RING FINGER | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF12428 | PFAM | Protein of unknown function (DUF3675) | JGI | ISS | |
| UniRef100_G7IAT6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase MARCH2 n=1 Tax=Medicago truncatula RepID=G7IAT6_MEDTR | SoyBase | E_val: 2.00E-160 | ISS |
| UniRef100_I1LEN1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEN1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g41210 not represented in the dataset |
Glyma10g41210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g26060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g265800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g41210.1 sequence type=CDS gene model=Glyma10g41210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGGATCACTTTGAGTTGCTGGTTGATCGATTGCTTACTGAGTCCACATTAGAAGCTGCACTTGAAAGCAGAAATAGGTCAATACTGGCTGCATCCTCTGCGGGGAATGATGCAAAAATTGATCTCAATTTGATGAAGATGGGTGTGGATGATATCAAATTTCCAGGGAAGGTGGTAGAATGCAGGATATGTCATGATGATGATGAAGATTCCAATATGGAGACACCCTGCTCTTGTCGTGGTAGTTTGAAGTACGCCCACCGCAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACCACATGTGAGATATGCCACCAGCAATTCAAGCCTGGCTATACTGCTCCTCCACCACTATTTCAGTTTGGACGTATTCCAATGAGTTTTAGGGGAAATTGGGAGATTTCAAGAAGAGATTTGAATAGTACTCATTTGGTTAGCATGGTCCCCACTGATCAGAACCTTACCACTTCTAACTATGATCAGTATTCAGCCTCTGCTACTGGAAGTTTGATTTGCTGTCGTTCAATTGCTGTCATTTTCATGGTTCTTCTGATTTTAAGACATACACTTCCCCTTGTAATCAGTGGAAACAAGGAGTATTCTTTCCCACTCTTTTTGCTGATGTTATTTCGGACTGCGGGAGTTGTTCTTCCTATATACTTCATGGTTAGAGCAGTTGCATTAATCCAGCGGCATCGGAGACAAAATCGAGAGCATCTTAATGCCTCGGCCAGTTCATCTGACGATGAAAGTGAGCAAGCAGATTTGCAGTCTCAGCCTCAGCCTCATGTCATACATGTACTGTAA
>Glyma10g41210.1 sequence type=predicted peptide gene model=Glyma10g41210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDHFELLVDRLLTESTLEAALESRNRSILAASSAGNDAKIDLNLMKMGVDDIKFPGKVVECRICHDDDEDSNMETPCSCRGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTTSNYDQYSASATGSLICCRSIAVIFMVLLILRHTLPLVISGNKEYSFPLFLLMLFRTAGVVLPIYFMVRAVALIQRHRRQNREHLNASASSSDDESEQADLQSQPQPHVIHVL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
