SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G56290 | AT | Annotation by Michelle Graham. TAIR10: CwfJ-like family protein | chr1:21075939-21078608 FORWARD LENGTH=692 | SoyBase | E_val: 0 | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010074 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of meristem identity | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG2477 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12072 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04676 | PFAM | Protein similar to CwfJ C-terminus 2 | JGI | ISS | |
| PF04677 | PFAM | Protein similar to CwfJ C-terminus 1 | JGI | ISS | |
| UniRef100_B9SK72 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SK72_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CF5F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CF5F related cluster n=1 Tax=unknown RepID=UPI000233CF5F | SoyBase | E_val: 0 | ISS |
|
Glyma10g41050 not represented in the dataset |
Glyma10g41050 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g26220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g264200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g41050.1 sequence type=CDS gene model=Glyma10g41050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTCAGGGGTGAAATTCATTCCCCGGGACCAGGTGCATGGTGAGGACTTGGATTCTGTCTCGAAAGAAAGGAAAAAATCAGATAGGAGGAGGGAAAAGAGTAAGAGGAAGGGGAGGAGCTCTAGGGACAGCTCTGATGATGATGATGGGCTTGAGAAGATTAAGAAAGGATCTAGAAAGAAGAAGTGGTATTCGTCGGATGAAGACTCTTCTATTTACACAACTGAAAGCGAGAGTGAGAAAGGTGAAAAGAAGAGAAGGATGAGAGCAAAAAAGAAAAGGGGTGATGGTTTGTCGCGTGATTCTGGTGAGAGGTCAAAAGGAAGATCACGATCCAGGAGTGGTAAAAAAGAATATACATCTGAGGATGAGGAAGACTCCTCATATTCTTCTGATGGTAGTGATACTATTTTGGGTCGACAAGGGAAGCGCCAAAAGTTAGATAGAAAAGACGGGAGTAAGAGGAACAAGATCAAAGGTGAAGCTACTTGCGGCACAGTAGATTCTACAAGTGAGATGGAAATTGCAAGAAAAGAAATGGGATTGGATTGGATGCTTAGGTCTGAAAGTAAGAAGCCTGTAGTTACTGAAACAGAGGAAACATTGTCAGAGGAGGTTCCTGTCGAGGAGTCAAAGAAGGCAAATCCTAAGGAACTGAATCCATATCTGAAGGATAATGGAAGTGGTTACCCGGAAGAAAGTGGAGCTAAAGTTGGTGCTGACCAACTTCTATCTTCTTCCCTTGTTGGGGATGGAGGAGCAAGTTGGAGACTTAAAGCCTTAAAGCGTGCACAAGAGCAAGCAGCTCGAGAAGGACGGAGATTCAACGAGGTTGTGGAAGAAAGGTGGAGTTCTCTTGGTGAGTTGACTGCAGCTGTTGCATCTCATGCAGCTGCCCCAGCTCGTGCTCATCTGCGTGCTATAAAAAATAGACAAAGAGGGATAACTGAAGAAAATTCACAAGATTCTGATAAGCTTGGTCGAAGGGATTCTAAAAGGGACTACTTAAAGGATGTTTCTGTTCGGCACCATGAAATGAAAGCACCTAAAGTTCAAGATTCTTTGTCTTGGGGAAAGCGAAAGAGCCAACAAGTGGTAGCTGAGGGTGCCGGGGTCATCTCTGCTGCAGTATCTAGCCTAAATAAGTTTGCCAATGATGGAAACTTTATGCATGATTTTGGTAGCAAGATGAGTAATAATTCTGATGGCTCTGTTTTAGAAAGTAGTGAATTAGAAAAGGTTTCGTTGGAAGCAAACACACCTGGAGAAAGAAGTGTGGTAGTCAAGAATGAGATGAGTGAAAACCAGTTGGCAGCTAAGGTTATGCAACTTCGTTTGAAGGGAAAGCATGAAGAAGCTGACAAACTGATGCAAGAAGCAAAAGTTATGAACACAAAGCAAGGAAATCAAGATCATTCAATTAGATCAGGAACTGAGGGAAGTTCTAGCAGGTATGCTATGCAGAAGATATCTTCTGAGCAGAAGAAAGGAGAGGATGATGGTGATATGCATCTTGCTCACAAGATCATGCAGAACAAGCAGTTTAGGGCTTCTACTCAGGCTGATGATGAATATGACTTTGAGGATGGTCCAAGCAGAAAGAGTAGAAAGAAGCAAGGAGGTGATGATCACAAGAGTATCCAAAAGAAGACAAATCGATTCTTGACTCAGCAAGAGCGCTGCCTATTTTGTTTAGAAAATCCAAATCGGCCTATGCATCTTGTTGTTTCAATCGCAAATTTCACATATCTTATGTTGCCAAAGTGGCAGCCTGTGGTGCCTGGTCATTGCTGCATTTTACCTATTCAGCATGAATCAGCTACAAGAACTGTAGACGATAATGTCTGGACAGAAATTCGAAACTTCAAGAAGTGCCTAATTATGATGTTTGCTAAGCAAGAGAAGGAGGTGGTGTTTCTTGAGACTGTGATGGGATTGGCACAGCAACGAAGGCATTGTATGGTTGAGTGCATTCCCTTACCCGAAGATATTGCCAAAGAGGCTCCTTTGTACTTTAAAAAGGCGATTGATGAAGCTGAAGATGAGTGGAGCCAGCACAATGCAAAGAAACTTATTGATACAAGTCAAAAGGGACTGCGCAATTCAATACCTAAGCACTTTCCATATTTTCACGTTGAATTTGGTCTAAACAAGGGTTTTGTCCATGTTATTGATGATGAAAAGCAGTTTAACATCAGCCTTGGCTTGAATGTCATAAGAGGCATGCTACATTTGGCAGAGGAGGACATGTACAGGCGACGGCGCTACGAGGCTGTGGAGGTACAAAAGCAAGCAGTTGAAAGCTTTTCCAAAGAGTGGAAACATTTTGACTGGACAAAACAGCTTCATGAAACTTAA
>Glyma10g41050.1 sequence type=predicted peptide gene model=Glyma10g41050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSGVKFIPRDQVHGEDLDSVSKERKKSDRRREKSKRKGRSSRDSSDDDDGLEKIKKGSRKKKWYSSDEDSSIYTTESESEKGEKKRRMRAKKKRGDGLSRDSGERSKGRSRSRSGKKEYTSEDEEDSSYSSDGSDTILGRQGKRQKLDRKDGSKRNKIKGEATCGTVDSTSEMEIARKEMGLDWMLRSESKKPVVTETEETLSEEVPVEESKKANPKELNPYLKDNGSGYPEESGAKVGADQLLSSSLVGDGGASWRLKALKRAQEQAAREGRRFNEVVEERWSSLGELTAAVASHAAAPARAHLRAIKNRQRGITEENSQDSDKLGRRDSKRDYLKDVSVRHHEMKAPKVQDSLSWGKRKSQQVVAEGAGVISAAVSSLNKFANDGNFMHDFGSKMSNNSDGSVLESSELEKVSLEANTPGERSVVVKNEMSENQLAAKVMQLRLKGKHEEADKLMQEAKVMNTKQGNQDHSIRSGTEGSSSRYAMQKISSEQKKGEDDGDMHLAHKIMQNKQFRASTQADDEYDFEDGPSRKSRKKQGGDDHKSIQKKTNRFLTQQERCLFCLENPNRPMHLVVSIANFTYLMLPKWQPVVPGHCCILPIQHESATRTVDDNVWTEIRNFKKCLIMMFAKQEKEVVFLETVMGLAQQRRHCMVECIPLPEDIAKEAPLYFKKAIDEAEDEWSQHNAKKLIDTSQKGLRNSIPKHFPYFHVEFGLNKGFVHVIDDEKQFNISLGLNVIRGMLHLAEEDMYRRRRYEAVEVQKQAVESFSKEWKHFDWTKQLHET*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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