SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35220 | AT | Annotation by Michelle Graham. TAIR10: Cyclase family protein | chr4:16752636-16753966 FORWARD LENGTH=272 | SoyBase | E_val: 2.00E-133 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF04199 | PFAM | Putative cyclase | JGI | ISS | |
| UniRef100_D7MD29 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MD29_ARALL | SoyBase | E_val: 3.00E-131 | ISS |
| UniRef100_I1LEK6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LEK6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g40960 not represented in the dataset |
Glyma10g40960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g26310 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g263300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g40960.4 sequence type=transcript gene model=Glyma10g40960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GATTTTTTAAAATTTTTTTGTCATTGTTGTAAAAATAACAAATAATAAATAAAAAAATTAAAAAATAACATTCTGTCAAGAGATGGATGTGTTTCATTCATCTTTGTGTTTCATTCATCTTTCTCAGTCAACCATGAACTCTCGATCACTCTTTGCCTTCCTCTTCGCAATTTGCGCGCACTCCGTCGCCGTTGCCGACACCTCCTCCGCGTATCCTTCCATCCCCGGCACGGAAACCGGTGAGTGCTCCCTCCGCGGCGTGGGCGTGGGCGACGGTGTTCTGGTTCCTCCACGGCGAGAAGTATACGAGGAGGGGCGAATCTTCGACATCACTCACAGATATGTCCCCGAGATGCCGGTGTGGGACTCGACGGAGGGGCTCGGGCAACACTTCCTGTGGCTCGATAAGAGCATGAAGAATGGCTCGCTCGCTAACAGCTCTAACATGAAGCTCGGTGTTCACACCGGCACCCATGTCGACGCGCCCGGTCACTTTTACGACAATTACTACGACGCTGGCTTCGACGTTGACTCACTCGACCTAACGCTCCTCAATGGCCTTGCACTTCTGGTTGATGTTCCGCGGGATAAAAACATTACTGCTGAGGTTATGAGGTCCCTGAATATCCCTAGAGGTGTAAGCCGTGTGCTTTTCAGAACTTTAAACACTGACAGGCGACTCATGTTTAAGAAAGAATTTGACACAAGCTATGTGGGATTCAAGGAGGATGGTGCAAAATGGCTGGCAGAGAACACTGACATCAAACTTGTAGGAGTTGATTACTTATCTGTTGCTGCTTATGATCACTCCATTCCATCTCATCTTGTTTTTCTGGAAAGCAAGGAAATCATTCTTGTGGAAGGCCTAAAGCTTGATGATGTCCCAGCAGGAATATATTCATTGAATTGCTTGCCTCTTAGGTTGGTTCACTCTGAGGCATCACCAATTCGATGTATTCTGATCAGATGATCCATGATGGGGTCAAACCTGGTTTTCAATTGCACGGATGAACCTGCCATTAGAAGCAACGTAGCCCCGAATACAATTAGTGGTGTCCATAAGAAGCAGTTTGATGCAAATTGCAAGCTAAGCTGATAGTAGTACGTTGAAATTACTCGTATTTTACGTCCTTGGGTTGTAAACTACCGAGTTATTGTGATTAAACTTCAGTTGCGGACTAGGGGTCCACCTGTATTAACTTATGTTTTTAATATTTACCTAGGCAAGTACTTGCGCAATTCTGAATACGCATGCTTGTACGCCTCAATAATTATATCTATTTCTCTATGAAAAATAATGAAATACTAGTAAGGATCTCGTGCAATATAATTGAGCGTGTGTAAATAAAAATCTGT
>Glyma10g40960.3 sequence type=CDS gene model=Glyma10g40960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTGTTTCATTCATCTTTGTGTTTCATTCATCTTTCTCAGTCAACCATGAACTCTCGATCACTCTTTGCCTTCCTCTTCGCAATTTGCGCGCACTCCGTCGCCGTTGCCGACACCTCCTCCGCGTATCCTTCCATCCCCGGCACGGAAACCGGTGAGTGCTCCCTCCGCGGCGTGGGCGTGGGCGACGGTGTTCTGGTTCCTCCACGGCGAGAAGTATACGAGGAGGGGCGAATCTTCGACATCACTCACAGATATGTCCCCGAGATGCCGGTGTGGGACTCGACGGAGGGGCTCGGGCAACACTTCCTGTGGCTCGATAAGAGCATGAAGAATGGCTCGCTCGCTAACAGCTCTAACATGAAGCTCGGTGTTCACACCGGCACCCATGTCGACGCGCCCGGTCACTTTTACGACAATTACTACGACGCTGGCTTCGACGTTGACTCACTCGACCTAACGCTCCTCAATGGCCTTGCACTTCTGGTTGATGTTCCGCGGGATAAAAACATTACTGCTGAGGTTATGAGGTCCCTGAATATCCCTAGAGGTGTAAGCCGTGTGCTTTTCAGAACTTTAAACACTGACAGGCGACTCATGTTTAAGAAAGAATTTGACACAAGCTATGTGGGATTCAAGGAGGATGGTGCAAAATGGCTGGCAGAGAACACTGACATCAAACTTGTAGGAGTTGATTACTTATCTGTTGCTGCTTATGATCACTCCATTCCATCTCATCTTGTTTTTCTGGAAAGCAAGGAAATCATTCTTGTGGAAGGCCTAAAGCTTGATGATGTCCCAGCAGGAATATATTCATTGAATTGCTTGCCTCTTAGGTTGGTTCACTCTGAGGCATCACCAATTCGATGTATTCTGATCAGATGA >Glyma10g40960.4 sequence type=CDS gene model=Glyma10g40960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTGTTTCATTCATCTTTGTGTTTCATTCATCTTTCTCAGTCAACCATGAACTCTCGATCACTCTTTGCCTTCCTCTTCGCAATTTGCGCGCACTCCGTCGCCGTTGCCGACACCTCCTCCGCGTATCCTTCCATCCCCGGCACGGAAACCGGTGAGTGCTCCCTCCGCGGCGTGGGCGTGGGCGACGGTGTTCTGGTTCCTCCACGGCGAGAAGTATACGAGGAGGGGCGAATCTTCGACATCACTCACAGATATGTCCCCGAGATGCCGGTGTGGGACTCGACGGAGGGGCTCGGGCAACACTTCCTGTGGCTCGATAAGAGCATGAAGAATGGCTCGCTCGCTAACAGCTCTAACATGAAGCTCGGTGTTCACACCGGCACCCATGTCGACGCGCCCGGTCACTTTTACGACAATTACTACGACGCTGGCTTCGACGTTGACTCACTCGACCTAACGCTCCTCAATGGCCTTGCACTTCTGGTTGATGTTCCGCGGGATAAAAACATTACTGCTGAGGTTATGAGGTCCCTGAATATCCCTAGAGGTGTAAGCCGTGTGCTTTTCAGAACTTTAAACACTGACAGGCGACTCATGTTTAAGAAAGAATTTGACACAAGCTATGTGGGATTCAAGGAGGATGGTGCAAAATGGCTGGCAGAGAACACTGACATCAAACTTGTAGGAGTTGATTACTTATCTGTTGCTGCTTATGATCACTCCATTCCATCTCATCTTGTTTTTCTGGAAAGCAAGGAAATCATTCTTGTGGAAGGCCTAAAGCTTGATGATGTCCCAGCAGGAATATATTCATTGAATTGCTTGCCTCTTAGGTTGGTTCACTCTGAGGCATCACCAATTCGATGTATTCTGATCAGATGA
>Glyma10g40960.3 sequence type=predicted peptide gene model=Glyma10g40960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVFHSSLCFIHLSQSTMNSRSLFAFLFAICAHSVAVADTSSAYPSIPGTETGECSLRGVGVGDGVLVPPRREVYEEGRIFDITHRYVPEMPVWDSTEGLGQHFLWLDKSMKNGSLANSSNMKLGVHTGTHVDAPGHFYDNYYDAGFDVDSLDLTLLNGLALLVDVPRDKNITAEVMRSLNIPRGVSRVLFRTLNTDRRLMFKKEFDTSYVGFKEDGAKWLAENTDIKLVGVDYLSVAAYDHSIPSHLVFLESKEIILVEGLKLDDVPAGIYSLNCLPLRLVHSEASPIRCILIR* >Glyma10g40960.4 sequence type=predicted peptide gene model=Glyma10g40960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVFHSSLCFIHLSQSTMNSRSLFAFLFAICAHSVAVADTSSAYPSIPGTETGECSLRGVGVGDGVLVPPRREVYEEGRIFDITHRYVPEMPVWDSTEGLGQHFLWLDKSMKNGSLANSSNMKLGVHTGTHVDAPGHFYDNYYDAGFDVDSLDLTLLNGLALLVDVPRDKNITAEVMRSLNIPRGVSRVLFRTLNTDRRLMFKKEFDTSYVGFKEDGAKWLAENTDIKLVGVDYLSVAAYDHSIPSHLVFLESKEIILVEGLKLDDVPAGIYSLNCLPLRLVHSEASPIRCILIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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