SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19490 | AT | Annotation by Michelle Graham. TAIR10: sodium:hydrogen antiporter 1 | chr3:6754875-6758127 REVERSE LENGTH=576 | SoyBase | E_val: 0 | ISS |
| GO:0006814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transport | SoyBase | N/A | ISS |
| GO:0006848 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyruvate transport | SoyBase | N/A | ISS |
| GO:0015746 | GO-bp | Annotation by Michelle Graham. GO Biological Process: citrate transport | SoyBase | N/A | ISS |
| GO:0035725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0015137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: citrate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015385 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity | SoyBase | N/A | ISS |
| GO:0015386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium:hydrogen antiporter activity | SoyBase | N/A | ISS |
| GO:0050833 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyruvate transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR10283 | Panther | CATION TRANSPORTER RELATED | JGI | ISS | |
| PTHR10283:SF42 | Panther | JGI | ISS | ||
| PF03600 | PFAM | Citrate transporter | JGI | ISS | |
| UniRef100_B9RYA4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Na+/h+ antitransporter, putative n=1 Tax=Ricinus communis RepID=B9RYA4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LEK2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEK2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g40920 not represented in the dataset |
Glyma10g40920 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g262900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g40920.1 sequence type=CDS gene model=Glyma10g40920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTACGTTTTCAATTGGGACACACTTGCCCATGTTCCAGCATTTGCATAATTCTAGACTTCCACTTCTTGGCCTTTGCACCGTTGAATCTTCACCCTTCTTTGGCTCCTCTTCTTGCAGAACCAGATTCGCAGGTGCCATCCCCACGTTGCTCCGTCACAATGTATTGGCACGTGCCGAAGATAAGGCCAGAGACCCTACACCTTCTTCCTTTCAGCCTCAACAAAGTTCTCAGCAACAGTTTCAGAACTTAACACCAGAATCTGGGAGTTGTGATCCCCTATGTTCACTCGATGAAACAAGCTCACAAGAGTTTGAAGACAGCTACCAGCCCAAGACTGATTTCCTCAAAGCTGTTGCAATATTAGCAACAGCTGCAACTGGGGCAGTGGCAATTAATCATTCTTGGGTAGCCACTAATCAGGATCTTGCTATGGCATTGCTATTTGTAATAGGATATGCAGGCATCATATTTGAAGAATCTCTAGCCTTCAATAAAAGTGGAGTGGGACTGTTGATGGCTGTAAGCTTATGGGTGATACGGAGTATTGGGGCTCCATCAACTGATATAGCTGTTTCAGAGCTTACACATGCATCTGCAGAAGTCAGTGAAATAGTGTTTTTCTTGCTTGGTGCAATGACCATTGTTGAGATCGTTGATGCTCATCAAGGATTTAAGCTGGTTACTGACAATATAACAACCCGAAACCCACGCCTTCTCCTCTGGGTGATTGGAATTGTTACATTTTTTCTCAGTTCAGTTCTAGACAACCTGACATCCACCATAGTTATGGTTTCTCTGTTGCGGAAATTGGTGCCTCCATCAGAGTACCGAAAGATTCTTGGAGCTGTTGTTGTAATAGCAGCAAATGCGGGGGGTGCATGGACTCCTATTGGTGATGTTACAACTACTATGCTGTGGATACATGGGCAAATATCTACAGTTCAAACAGTGAAGGATTTGTTTGTACCTTCAGCCGTTTCTCTAGCTGTTCCACTGGCTCTAATGTCCCTGACAAGTGAAGTTAATGGGAAGGGACAAAATTCTCCCAATGTCTTGGCATCGGAACAGATTGCTCCTCGAGGACAGCTTGTTTTCTCTGTGGGTTTAGGAGCTTTGATTTTTGTCCCAGTATTCAAGGCTCTTACAGGTTTGCCTCCATACATGGGGATGCTGCTTGGACTCGGTGTGCTTTGGATCCTCACAGATGCTATCCATTACGGTGAATCTGAAAGGCAGAAGCTAAAAGTACCCCAGGCTCTCTCAAGGATAGACACCCAAGGAGTACTATTCTTTCTGGGAATTCTATTATCCGTTAGCAGCCTGGAGGCAGCTGGGATTCTTCGGGAAATAGCAAACTACCTTGATGCACATGTGCCAAGTAGTGAACTGATTGCCAGTACTATTGGACTCATATCTGCAGTAATAGACAATGTTCCATTGGTTGCTGCCACAATGGGAATGTATGATGTCACTTCTTTCCCTCAGGATTCTGAGTTCTGGCAATTGATTGCATTTTGTGCTGGTACTGGTGGATCCATGTTAATTATTGGCTCAGCTGCTGGAGTTGCGTTCATGGGGATGGAAAAGGTGGACTTCTTTTGGTACTTACGAAAGATTAGTGGCTTTGCTTTTGCAGGTTATGCTGCTGGTATCGTTGCCTATTTAGCTCTCCATAAACTCAACATCTCCCTACCAACTCTAGCAGAGGTTCCTTTCCTTTCTGGTTCATAA
>Glyma10g40920.1 sequence type=predicted peptide gene model=Glyma10g40920 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATFSIGTHLPMFQHLHNSRLPLLGLCTVESSPFFGSSSCRTRFAGAIPTLLRHNVLARAEDKARDPTPSSFQPQQSSQQQFQNLTPESGSCDPLCSLDETSSQEFEDSYQPKTDFLKAVAILATAATGAVAINHSWVATNQDLAMALLFVIGYAGIIFEESLAFNKSGVGLLMAVSLWVIRSIGAPSTDIAVSELTHASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRNPRLLLWVIGIVTFFLSSVLDNLTSTIVMVSLLRKLVPPSEYRKILGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTVQTVKDLFVPSAVSLAVPLALMSLTSEVNGKGQNSPNVLASEQIAPRGQLVFSVGLGALIFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGVLFFLGILLSVSSLEAAGILREIANYLDAHVPSSELIASTIGLISAVIDNVPLVAATMGMYDVTSFPQDSEFWQLIAFCAGTGGSMLIIGSAAGVAFMGMEKVDFFWYLRKISGFAFAGYAAGIVAYLALHKLNISLPTLAEVPFLSGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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