SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34200 | AT | Annotation by Michelle Graham. TAIR10: D-3-phosphoglycerate dehydrogenase | chr4:16374041-16376561 REVERSE LENGTH=603 | SoyBase | E_val: 0 | ISS |
| GO:0006564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-serine biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009561 | GO-bp | Annotation by Michelle Graham. GO Biological Process: megagametogenesis | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004617 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoglycerate dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016597 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: amino acid binding | SoyBase | N/A | ISS |
| GO:0016616 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | SoyBase | N/A | ISS |
| GO:0048037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cofactor binding | SoyBase | N/A | ISS |
| GO:0051287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NAD binding | SoyBase | N/A | ISS |
| KOG0068 | KOG | D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily | JGI | ISS | |
| PTHR10996 | Panther | 2-HYDROXYACID DEHYDROGENASE | JGI | ISS | |
| PTHR10996:SF20 | Panther | ERYTHRONATE-4-PHOSPHATE DEHYDROGENASE | JGI | ISS | |
| PF00389 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | JGI | ISS | |
| PF01842 | PFAM | ACT domain | JGI | ISS | |
| PF02826 | PFAM | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | JGI | ISS | |
| UniRef100_B9RYA3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: D-3-phosphoglycerate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RYA3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LEI9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEI9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g40750 not represented in the dataset |
Glyma10g40750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g26530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g261400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g40750.1 sequence type=CDS gene model=Glyma10g40750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCACCGCCACATCCCAAACCCTTCGATTCCAATCTCCGTCACTTTCTCTCTCCTCCAAAATCCCTCTCTCCGCATTCTCCGTCTCGCTCCGCCCGCAACGCCGCGCCTCCCGCCACCTCGTGCTGGTCGTCTCCGCCGGCCTCGACGCAAAGCCCACGGTGCTCGTCGCGGAGAAGCTCGGCGACGCGGGGCTGAAGCTGCTCAAGGACTTCGCCAACGTCGACTGCTCCTACAACCTCAGCACCGAGGAGCTCTGCACCAAGATCTCGCTCTGCGACGCCCTCATCGTGCGCAGCGGCACCAAGGTCTCGCGCGAGGTCTTCGAGTCCTCTGCCGGCAGGTTGAAGGTCGTCGGAAGAGCCGGCGTCGGAATCGATAATGTGGATCTGGCTGCCGCCACCGAGCACGGGTGCTTGGTCGTCAATGCGCCCACCGCCAACACCGTCGCCGCCGCTGAGCACGGAATCGCGCTCCTTGCAGCCATGGCCAGGAACGTCGCTCAGGCCGATGCGTCCGTCAAAGCCGGGAAATGGCAGAGGAATAAATATGTTGGAGTTTCCTTGGTTGGGAAAACACTTGCGGTGTTGGGATTTGGGAAGGTTGGTTCTGAAGTTGCTCGTCGTGCCAAGGGACTTGGTATGAATGTCATTGCGCATGACCCGTATGCTCCTGCAGACCGTGCTAGGGCCATTGGTGTGGAGCTTGTGAACTTTGATGAGGCCATTGCCACTGCGGATTTCATCTCTCTACATATGCCTCTTACGGCTGCTACATCAAAGATACTCAATGACGAGACATTTGCCAAGATGAAGAAAGGAGTTCGCATAGTCAATGTTGCTCGTGGAGGGGTCATTGATGAGGATGCGCTTGTTAGGGCACTGGATTCTGGAATTGTAGCTCAGGCGGCTCTTGATGTTTTCACTGAGGAGCCACCACCCAAAGACAGCAAGTTGATTCTGCATGAGCTCGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGAAGGTGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGGGCATTGAAAGGGGAGCTTGCTGCTACTGCAGTCAATGCACCAATGGTTCCCTCAGAGGTGTTAACAGAATTGAAACCATTCATTGATCTTGCAGAGAAATTGGGTAGGCTAGCTGTCCAGCTGGTAGCAGGAGGAAGCGGTGTGAAAACAGTGAAGGTCACTTATGCCACCTCTAGGGGCCCTGATGATCTGGACACTCGTCTTCTCCGTGCCATGATAACCAAGGGTCTGATTGAGCCCATATCTAGTGTTTTTGTGAACTTGGTTAATGCTGATTTCACTGCCAAGCAAAGAGGGATCAGGATAACTGAGGAGAAGGTTATTCTTGATGGTTCACCTGAGAATCCACTGGAATTCGTTCAGGTGCAGATTGCTAATGTGGAATCTCGATTTGCTAGTGCCATATCAGATTCTGGGGAGATTAAAGTTGAGGGTCGGGTGAAAGATGGCATCCCCCATCTAACAAAGGTTGGGTCTTTTGATGTTGATGTGAGTTTGGAAGGTAGTATCATACTGTGTAGGCAGGTAGATCAACCAGGCATGATCGGAAAGGTTGGGAGCGTTTTGGGTGAGGAGAACGTGAATGTCAGCTTCATGAGTGTGGGAAGGATCGCTCCACGCAAGCAAGCTGTTATGGCAATTGGAGTGGACGAACAACCTAGCAAGGAATCTTTGAAGAAGATTGGAGACATTCCTGCTGTGGAAGAGTTCGTTTTCCTTAAATTGTAA
>Glyma10g40750.1 sequence type=predicted peptide gene model=Glyma10g40750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATATSQTLRFQSPSLSLSSKIPLSAFSVSLRPQRRASRHLVLVVSAGLDAKPTVLVAEKLGDAGLKLLKDFANVDCSYNLSTEELCTKISLCDALIVRSGTKVSREVFESSAGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAIGVELVNFDEAIATADFISLHMPLTAATSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTEEPPPKDSKLILHELVTATPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPSEVLTELKPFIDLAEKLGRLAVQLVAGGSGVKTVKVTYATSRGPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGIRITEEKVILDGSPENPLEFVQVQIANVESRFASAISDSGEIKVEGRVKDGIPHLTKVGSFDVDVSLEGSIILCRQVDQPGMIGKVGSVLGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPSKESLKKIGDIPAVEEFVFLKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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