Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g40730): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g40730): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma10g40730
Feature Type: gene_model
Chromosome: Gm10
Start: 48044089
stop: 48051059
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g40730
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G49820 AT
Annotation by Michelle Graham. TAIR10: S-methyl-5-thioribose kinase | chr1:18443005-18444907 FORWARD LENGTH=420
SoyBase E_val: 0 ISS
GO:0009086 GO-bp
Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process
SoyBase N/A ISS
GO:0019509 GO-bp
Annotation by Michelle Graham. GO Biological Process: L-methionine salvage from methylthioadenosine
SoyBase N/A ISS
GO:0071281 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion
SoyBase N/A ISS
GO:0071369 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus
SoyBase N/A ISS
GO:0071732 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
GO:0042802 GO-mf
Annotation by Michelle Graham. GO Molecular Function: identical protein binding
SoyBase N/A ISS
GO:0046522 GO-mf
Annotation by Michelle Graham. GO Molecular Function: S-methyl-5-thioribose kinase activity
SoyBase N/A ISS
PTHR10909 Panther
ELECTRON TRANSPORT OXIDOREDUCTASE
JGI ISS
PTHR10909:SF118 Panther
OS04G0669800 PROTEIN
JGI ISS
PF01636 PFAM
Phosphotransferase enzyme family
JGI ISS
UniRef100_B9RY82 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Methylthioribose kinase, putative n=1 Tax=Ricinus communis RepID=B9RY82_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1LEI8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LEI8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma10g40730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g40730
Paralog Evidence Comments
Glyma20g26580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g40730 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g261300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g40730
Transcripts of Glyma10g40730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g40730.2 sequence type=transcript gene model=Glyma10g40730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAATTCCTGTTACCGTAAAAAAAAAAAAAGAATTCCCAGGAATTTGTTAGCGTCTCTCTACTCCAAATGGAATAGAAAAAACGCACGAAAGATTCCATCCATTTGCGACTTGGGAGAGAGTACCATTGCTCCACTCCCTCTCCCTCTTCGCCGGCGGCCACCATGTCTTTGTCGGAGTTCCGACCACTCGACGACAAGTTCCTCATCGAATACATAAAGTCCGTCCCCGCCCTCTCCTCCAAACTCGCCGACAACTTCGACGACTTATCTGTCAAAGAAGTCGGAGATGGCAACCTTAACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGGGGAATCGTGGCCTATGACGAAGGAGAGAGCGTATTTTGAGTCACTGGCACTGAAAGAAGAGGGTCGTTTGAGCCCCGAACATGTTCCTGAAGTATATCACTTTGACCGTACCATGTCTTTGATTGGTATGCGTTACTTGGAGCCTCCACATATAATCCTCAGAAAAGGGTTGATTGCTGGGATTGAGTACCCTCTTTTGGCTCAACACATGGCTGATTTCATGGCAAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCCCTATCTCGATCGTGATGCTGAGGCAGTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACCCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCATTTTATGGACCAATGGGTTTTGATATTGGAGCATTCTTGGGAAACTTGATTTTGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTCTATCAAAAATTCACTTCACTTTGGGATGAGCACAAAAATGGTGCTGGTGAAGCATATCTTCCAACAATCTATAACAATCCTGAGGTTCAACTGCTTGTACAGAAGAAATACATGACAGATTTGTTTCACGACAGTCTTGGATTTGGTGCTGCTAAAATTATTAGGAGAATTGTTGGTGTGGCACATGTTGAGGATTTCGAATCCATTACTGATGCTGCTAAACGGGCAAGTTGTGAACGGCGGGCACTTGATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAAGGCATTGCTGAAATTATTTCAGCAATTCGGCAATACTAGCCATAACAAGGTTTTGCTATATCAATAGTTCAATACCTCCGTAATGTATCGTGTTCCCCAACATTTTAACTGAGTTGCTCTAGTAACAGTTTTGATCACTTTCTAATTATATTATCCATACTGATAACATTTCTCTTGTGGACCATCTTAAAATTTATATCCACCGTGATTTTTGAATGATTTTTATATTGACTGC
>Glyma10g40730.3 sequence type=transcript gene model=Glyma10g40730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAATTCCTGTTACCGTAAAAAAAAAAAAAGAATTCCCAGGAATTTGTTAGCGTCTCTCTACTCCAAATGGAATAGAAAAAACGCACGAAAGATTCCATCCATTTGCGACTTGGGAGAGAGTACCATTGCTCCACTCCCTCTCCCTCTTCGCCGGCGGCCACCATGTCTTTGTCGGAGTTCCGACCACTCGACGACAAGTTCCTCATCGAATACATAAAGTCCGTCCCCGCCCTCTCCTCCAAACTCGCCGACAACTTCGACGACTTATCTGTCAAAGAAGTCGGAGATGGCAACCTTAACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGGCTCTGCCATACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAGAGAGCGTATTTTGAGTCACTGGCACTGAAAGAAGAGGGTCGTTTGAGCCCCGAACATGTTCCTGAAGTATATCACTTTGACCGTACCATGTCTTTGATTGGTATGCGTTACTTGGAGCCTCCACATATAATCCTCAGAAAAGGGTTGATTGCTGGGATTGAGTACCCTCTTTTGGCTCAACACATGGCTGATTTCATGGCAAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCCCTATCTCGATCGTGATGCTGAGGCAGTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACCCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCATTTTATGGACCAATGGGTTTTGATATTGGAGCATTCTTGGGAAACTTGATTTTGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTCTATCAAAAATTCACTTCACTTTGGGATGAGCACAAAAATGGTGCTGGTGAAGCATATCTTCCAACAATCTATAACAATCCTGAGGTTCAACTGCTTGTACAGAAGAAATACATGACAGATTTGTTTCACGACAGTCTTGGATTTGGTGCTGCTAAAATTATTAGGAGAATTGTTGGTGTGGCACATGTTGAGGATTTCGAATCCATTACTGATGCTGCTAAACGGGCAAGTTGTGAACGGCGGGCACTTGATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAAGGCATTGCTGAAATTATTTCAGCAATTCGGCAATACTAGCCATAACAAGGAGCGTTTTGCTGGAAGACCCCCCATATGAATTGGGTGGCTGAGTCAAGTGTTTGTTTGGCGTATTCGTCCCCTATTGCATCACGGAAACGAACACCACCAGGGGTTGAGAGGGCGTTGTTGGTGACACTGTATTCAACCGCCAGTGTTCCTTGCATTGCTGCTGCTAGGAACACTGAGAAGCAAAGGACATGCATCATCATGGTTATTTTTTGAGAGACTTTTGGATTCTCTTATTCTTGGAGAATTAGTATATGGTTGGTCATTGC
Coding sequences of Glyma10g40730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g40730.1 sequence type=CDS gene model=Glyma10g40730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTTTGTCGGAGTTCCGACCACTCGACGACAAGTTCCTCATCGAATACATAAAGTCCGTCCCCGCCCTCTCCTCCAAACTCGCCGACAACTTCGACGACTTATCTGTCAAAGAAGTCGGAGATGGCAACCTTAACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGGCTCTGCCATACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAGAGAGCGTATTTTGAGTCACTGGCACTGAAAGAAGAGGGTCGTTTGAGCCCCGAACATGTTCCTGAAGTATATCACTTTGACCGTACCATGTCTTTGATTGGTATGCGTTACTTGGAGCCTCCACATATAATCCTCAGAAAAGGGTTGATTGCTGGGATTGAGTACCCTCTTTTGGCTCAACACATGGCTGATTTCATGGCAAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCCCTATCTCGATCGTGATGCTGAGGCAGTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACCCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCATTTTATGGACCAATGGGTTTTGATATTGGAGCATTCTTGGGAAACTTGATTTTGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTCTATCAAAAATTCACTTCACTTTGGGATGAGCACAAAAATGGTGCTGGTGAAGCATATCTTCCAACAATCTATAACAATCCTGAGGTTCAACTGCTTGTACAGAAGAAATACATGACAGATTTGTTTCACGACAGTCTTGGATTTGGTGCTGCTAAAATTATTAGGAGAATTGTTGGTGTGGCACATGTTGAGGATTTCGAATCCATTACTGATGCTGCTAAACGGGCAAGTTGTGAACGGCGGGCACTTGATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAAGGCATTGCTGAAATTATTTCAGCAATTCGGCAATACTAG
>Glyma10g40730.2 sequence type=CDS gene model=Glyma10g40730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACGAAGGAGAGAGCGTATTTTGAGTCACTGGCACTGAAAGAAGAGGGTCGTTTGAGCCCCGAACATGTTCCTGAAGTATATCACTTTGACCGTACCATGTCTTTGATTGGTATGCGTTACTTGGAGCCTCCACATATAATCCTCAGAAAAGGGTTGATTGCTGGGATTGAGTACCCTCTTTTGGCTCAACACATGGCTGATTTCATGGCAAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCCCTATCTCGATCGTGATGCTGAGGCAGTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACCCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCATTTTATGGACCAATGGGTTTTGATATTGGAGCATTCTTGGGAAACTTGATTTTGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTCTATCAAAAATTCACTTCACTTTGGGATGAGCACAAAAATGGTGCTGGTGAAGCATATCTTCCAACAATCTATAACAATCCTGAGGTTCAACTGCTTGTACAGAAGAAATACATGACAGATTTGTTTCACGACAGTCTTGGATTTGGTGCTGCTAAAATTATTAGGAGAATTGTTGGTGTGGCACATGTTGAGGATTTCGAATCCATTACTGATGCTGCTAAACGGGCAAGTTGTGAACGGCGGGCACTTGATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAAGGCATTGCTGAAATTATTTCAGCAATTCGGCAATACTAG
>Glyma10g40730.3 sequence type=CDS gene model=Glyma10g40730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTTTGTCGGAGTTCCGACCACTCGACGACAAGTTCCTCATCGAATACATAAAGTCCGTCCCCGCCCTCTCCTCCAAACTCGCCGACAACTTCGACGACTTATCTGTCAAAGAAGTCGGAGATGGCAACCTTAACTTCGTCTTCATTGTTTCCAACCCCGCAGGTTCTTTTGTCATCAAACAGGCTCTGCCATACGTTCGTTGCATAGGGGAATCGTGGCCTATGACGAAGGAGAGAGCGTATTTTGAGTCACTGGCACTGAAAGAAGAGGGTCGTTTGAGCCCCGAACATGTTCCTGAAGTATATCACTTTGACCGTACCATGTCTTTGATTGGTATGCGTTACTTGGAGCCTCCACATATAATCCTCAGAAAAGGGTTGATTGCTGGGATTGAGTACCCTCTTTTGGCTCAACACATGGCTGATTTCATGGCAAAGACACTCTTCTTCACGTCTCTGCTTTTCCGTTCCACATCTGACCACAAACGAGACGTTGCCGAATTTTGTGGGAATGTGGAGTTATGCAGGCTCACTGAGCAGGTTGTTTTCTCCGACCCTTATAAAGTTTCTCAATATAATCGTTGGACTTCCCCCTATCTCGATCGTGATGCTGAGGCAGTTCGGGAAGACAATCCGCTGAAGCTTGAAGTTGCTGAGCTGAAATCTAAGTTCATTGAGAGGGCCCAGGCACTAATACATGGAGATCTACACACTGGTTCTGTGATGGTTACCCGTGAATCAACTCAAGTTATTGATCCAGAATTTGCATTTTATGGACCAATGGGTTTTGATATTGGAGCATTCTTGGGAAACTTGATTTTGGCTTTCTTTGCTCAAGATGGGCATGCTGATCAAGCAAATGATCGAAAAGCCTATAAGGAGTGGATTCTTAAGACAATCGAAGACAGTTGGAATCTTTTCTATCAAAAATTCACTTCACTTTGGGATGAGCACAAAAATGGTGCTGGTGAAGCATATCTTCCAACAATCTATAACAATCCTGAGGTTCAACTGCTTGTACAGAAGAAATACATGACAGATTTGTTTCACGACAGTCTTGGATTTGGTGCTGCTAAAATTATTAGGAGAATTGTTGGTGTGGCACATGTTGAGGATTTCGAATCCATTACTGATGCTGCTAAACGGGCAAGTTGTGAACGGCGGGCACTTGATTTAGCTAAGATGCTTCTCAAAGAAAGAAGAAAATTTGAAGGCATTGCTGAAATTATTTCAGCAATTCGGCAATACTAG
Predicted protein sequences of Glyma10g40730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g40730.1 sequence type=predicted peptide gene model=Glyma10g40730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLSEFRPLDDKFLIEYIKSVPALSSKLADNFDDLSVKEVGDGNLNFVFIVSNPAGSFVIKQALPYVRCIGESWPMTKERAYFESLALKEEGRLSPEHVPEVYHFDRTMSLIGMRYLEPPHIILRKGLIAGIEYPLLAQHMADFMAKTLFFTSLLFRSTSDHKRDVAEFCGNVELCRLTEQVVFSDPYKVSQYNRWTSPYLDRDAEAVREDNPLKLEVAELKSKFIERAQALIHGDLHTGSVMVTRESTQVIDPEFAFYGPMGFDIGAFLGNLILAFFAQDGHADQANDRKAYKEWILKTIEDSWNLFYQKFTSLWDEHKNGAGEAYLPTIYNNPEVQLLVQKKYMTDLFHDSLGFGAAKIIRRIVGVAHVEDFESITDAAKRASCERRALDLAKMLLKERRKFEGIAEIISAIRQY*
>Glyma10g40730.2 sequence type=predicted peptide gene model=Glyma10g40730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTKERAYFESLALKEEGRLSPEHVPEVYHFDRTMSLIGMRYLEPPHIILRKGLIAGIEYPLLAQHMADFMAKTLFFTSLLFRSTSDHKRDVAEFCGNVELCRLTEQVVFSDPYKVSQYNRWTSPYLDRDAEAVREDNPLKLEVAELKSKFIERAQALIHGDLHTGSVMVTRESTQVIDPEFAFYGPMGFDIGAFLGNLILAFFAQDGHADQANDRKAYKEWILKTIEDSWNLFYQKFTSLWDEHKNGAGEAYLPTIYNNPEVQLLVQKKYMTDLFHDSLGFGAAKIIRRIVGVAHVEDFESITDAAKRASCERRALDLAKMLLKERRKFEGIAEIISAIRQY*
>Glyma10g40730.3 sequence type=predicted peptide gene model=Glyma10g40730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSLSEFRPLDDKFLIEYIKSVPALSSKLADNFDDLSVKEVGDGNLNFVFIVSNPAGSFVIKQALPYVRCIGESWPMTKERAYFESLALKEEGRLSPEHVPEVYHFDRTMSLIGMRYLEPPHIILRKGLIAGIEYPLLAQHMADFMAKTLFFTSLLFRSTSDHKRDVAEFCGNVELCRLTEQVVFSDPYKVSQYNRWTSPYLDRDAEAVREDNPLKLEVAELKSKFIERAQALIHGDLHTGSVMVTRESTQVIDPEFAFYGPMGFDIGAFLGNLILAFFAQDGHADQANDRKAYKEWILKTIEDSWNLFYQKFTSLWDEHKNGAGEAYLPTIYNNPEVQLLVQKKYMTDLFHDSLGFGAAKIIRRIVGVAHVEDFESITDAAKRASCERRALDLAKMLLKERRKFEGIAEIISAIRQY*