SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G19510 | AT | Annotation by Michelle Graham. TAIR10: Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain | chr3:6763205-6766049 REVERSE LENGTH=723 | SoyBase | E_val: 2.00E-129 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008284 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome organization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0043565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding | SoyBase | N/A | ISS |
| KOG4299 | KOG | PHD Zn-finger protein | JGI | ISS | |
| PTHR12628 | Panther | POLYCOMB-LIKE TRANSCRIPTION FACTOR | JGI | ISS | |
| PTHR12628:SF11 | Panther | JGI | ISS | ||
| PF00046 | PFAM | Homeobox domain | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| UniRef100_B9SN98 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Homeobox protein HAT3.1, putative n=1 Tax=Ricinus communis RepID=B9SN98_RICCO | SoyBase | E_val: 3.00E-160 | ISS |
| UniRef100_UPI000233DEE1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233DEE1 related cluster n=1 Tax=unknown RepID=UPI000233DEE1 | SoyBase | E_val: 0 | ISS |
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Glyma10g40641 not represented in the dataset |
Glyma10g40641 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g26700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g260400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g40641.1 sequence type=CDS gene model=Glyma10g40641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTAGTCCAACTGGAGAATTGACAAGCCATAACGACGGTACCACCGACCGGATGGGAACTGAACAATGTGAATTGTCAGAAAAAACGCCTCAGATAGGCTCTGAAGGTTTAGAGAATGAACAAAAGGAGCTTGGTACTGAGTTAACCAGTTCGGTTATTGAAGAAAAATCAAATCAAGTTTCTGCCATTGTAACAGAGAATGCCGTTATTCAACTGCCTGAACCGCTTCAACATGACTTACAAAAGAATTGCCAGACTGTAGAAGGTTCATGCCTTGAACAAAGTACTGTCGAACAAGTCACTGTTGATTTATCTAATGATAAACCTGAAAACAAATGCAAACCATTGTCTGAAAATGTTCAAAGTGAACCCGTAGAATCCATTCCTGCCGTTGTTGTTGAAGGCCAAATGCAATCCAATCCATCTCAAGCGAATATGAGTTCTGTGAATGAATTATTGGATCAACCTTCTGGAGATGCTGTGAACAATATTAGTTCCAATTGTTCAGAAAAAATGTCTAATAGCCCAACTCATTCACAGTCTAGGCGCAAGGGTAAAAAGAACTCTAAATTATTGAAAAAGTATATGCTAAGGTCGTTAGGAAGCAGTGACAGAGCTTTGCGGTCAAGAACAAAAGAAAAACCCAAGGAACCTGAACCAACTAGTAATTTGGTTGATGGTAACAATAATGGAGTTAAGAGGAAAAGTGGGAGGAAGAAGAAAAAGAGAAAAGAGGAGGGAATTACTAATCAGTTTTCTAGAATCAGATCTCACTTAAGATATTTATTAAACCGAATAAGCTATGAAAACAGCTTGATTGATGCTTATTCTGGCGAGGGCTGGAAAGGATACAGTATCGAAAAGTTAAAGCCTGAGAAGGAGCTTCAGCGGGCTAAGTCGGAAATTCTTCGACGCAAATTGAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCCGAAGGAAAGTTTCCAGAATCTTTGTTTGATTCTGCAGGAGAGATTGACAGTGAGGATATATTTTGTGCAAAATGCCAGTCCAAAGAGTTGAGCACTAATAATGATATAATTCTTTGTGATGGTGTTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCGATGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTCGGAACAAGTCTCTCTATTAGTGACACCTGGGAGAGAGTCTTTCCTGAAGCAGCATCATTTGCTGGAAATAATATGGATAACAACTCGGGAGTTCCTTCTGATGATTCTGATGATGATGATTATAATCCTAATGGTCCAGATGATGTGAAAGTTGAAGGGGATGAGTCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGGTGGTTCACATGAGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGATCCTGATGCTCCAGATGTTGAATGTAAAGTCAATGAAGAAAGTTCAAGCTCTGATTTCACTTCTGACTCCGAGGATCTTGCTGCTGCAATTGAGGATAACACATCCCCTGGACAGGATGGAGGCATCAGTTCCAGCAAAAAAAAGGGTAAAGTTGGTAAGAAGCTATCTCTGCCCGATGAACTGTCATCTTTACTAGAGCCAGATTCTGGCCAAGAGGCTCCCACTCCTGTTTCTGGGAAAAGACATGTGGAAAGGTTGGACTACAAAAAGCTGTATGAGGAGACGTATCACAGTGATACGAGTGATGATGAAGATTGGAATGACACTGCTGCTCCAAGTGGAAAAAAGAAACTCACTGGCAATGTAACTCCTGTGTCACCAAATGGAAATGCTTCAAATAATTCTATACATACTCCTAAGAGGAATGCTCATCAGAATAATGTTGAAAATACAAATAATTCACCCACTAAATCACTTGAGGGCTGTTCGAAATCTGGTTCCAGGGATAAAAAGTCTGGATCTTCAGCACACAAAAGACTAGGAGAAGCCGTAGTTCAGAGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGGTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAAATGGAAACCAATTCAGGTATAAATGCTTCACAGCAAGTTACTGATGGCAGAGCTGAAAATGAGGGGGAGAAGGAATGTGAATTAATATCTCTGGAGTTCAGTGGAGAAAAATCAAAAACCCCAAACTCTAGAAAAAGGAAGCATTTGTCAGAACCCCTATCTGAAGCACAGCTGGATATCAATGGCTCAGCAGCAAGTTCACCAAATGTTCATCTAACGCAAATAGGCAATAAAATGAAGACAAGGAAAAGGAAATGA
>Glyma10g40641.1 sequence type=predicted peptide gene model=Glyma10g40641 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASPTGELTSHNDGTTDRMGTEQCELSEKTPQIGSEGLENEQKELGTELTSSVIEEKSNQVSAIVTENAVIQLPEPLQHDLQKNCQTVEGSCLEQSTVEQVTVDLSNDKPENKCKPLSENVQSEPVESIPAVVVEGQMQSNPSQANMSSVNELLDQPSGDAVNNISSNCSEKMSNSPTHSQSRRKGKKNSKLLKKYMLRSLGSSDRALRSRTKEKPKEPEPTSNLVDGNNNGVKRKSGRKKKKRKEEGITNQFSRIRSHLRYLLNRISYENSLIDAYSGEGWKGYSIEKLKPEKELQRAKSEILRRKLKIRDLFQNLDSLCAEGKFPESLFDSAGEIDSEDIFCAKCQSKELSTNNDIILCDGVCDRGFHQLCLDPPMLTEDIPPGDEGWLCPGCDCKDDCMDLVNDSFGTSLSISDTWERVFPEAASFAGNNMDNNSGVPSDDSDDDDYNPNGPDDVKVEGDESSSDESEYASASEKLEGGSHEDQYLGLPSEDSDDGDYDPDAPDVECKVNEESSSSDFTSDSEDLAAAIEDNTSPGQDGGISSSKKKGKVGKKLSLPDELSSLLEPDSGQEAPTPVSGKRHVERLDYKKLYEETYHSDTSDDEDWNDTAAPSGKKKLTGNVTPVSPNGNASNNSIHTPKRNAHQNNVENTNNSPTKSLEGCSKSGSRDKKSGSSAHKRLGEAVVQRLHKSFKENQYPDRTTKESLAQELGLTYQQVAKWFGNTRWSFRHSSQMETNSGINASQQVTDGRAENEGEKECELISLEFSGEKSKTPNSRKRKHLSEPLSEAQLDINGSAASSPNVHLTQIGNKMKTRKRK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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