Glyma10g40620 - SoyBase

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Report for Sequence Feature Glyma10g40620

Feature Type:	gene_model
Chromosome:	Gm10
Start:	47980413
stop:	47984217
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g40620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G14910	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14970.1); Has 605 Blast hits to 425 proteins in 102 species: Archae - 0; Bacteria - 300; Metazoa - 25; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink). \| chr2:6406957-6409015 REVERSE LENGTH=386	SoyBase	E_val: 1.00E-138	ISS
GO:0015996	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_I1LEH3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEH3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SEL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM23 (Fragment) n=1 Tax=Glycine max RepID=Q9SEL1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g40620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g40620

Paralog	Evidence	Comments
Glyma20g26710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g40620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g260200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g40620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g40620

Limit To All Plant Sequences

>Glyma10g40620.2   sequence type=transcript   gene model=Glyma10g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTGGCTGCGAGACAACGTCACAGAGAGAGAAGGGAAGGAAAAGTGGTGTTGGTGGTTGTCCTCCTCATTGGTATGGCAACCCTTTCCTCCATCCTCTCCTCCTCTCTTCCTCTTTTCCATCGCTACCCTAACCCTAACCCTTCGCTCTTTCGCCCCTCCCTTTCTCTCTCTTTCTCTCGCACTAAACCCCGTTCCCCCTTCCTCGTTCTCGCTGCCTCTTCCCATGATTTCGCCTCCAACTCCAAGAAATCAGTGCTCACCGAGTTGATACAAGAGATAGAACCTCTGGATGTTAGCCACATTCAGAAGGATGTTCCACCAACTACAGCAGATGCCATGAAGAGGACTATATCTGGTATGCTGGGCTTGCTTCCGTCTGATCAATTTCATGTTGTCATTGAGGCCTTGTGGGAACCTCTCTCCAAGTTACTGATTTCTTCAATGATGACTGGGTATACACTACGGAATGTTGAATATAGGCTTTGTCTTGAGAAAAACCTTGATATGTTTGAAGGAGATATAGAGAAGCCAAAGGCAGAGAGTATGAAAGTGGACTTACAAGGGTTGATGCATGACAGTGTAAATGCAATTGAGTTTGGTAAAAATAAGAATTTGTCTTCCAAAGTTGAAAAGCTTCATGAGGAAGCTGACATTCAAGAGCTTGGTGAAATATCTGCTGAAGCTCAACAATATATTTTTAATTTGCAATCTCGTTTGTCTTCTATGAAAAAGGAGCTGCATGAAGTAAAGAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGAGAAGAAAAGAACGATTTATTGGATTACTTGAGATCTCTTCAACCTGAACAGGTTTTTCCTTTTTCCTGAAAATTCCTGAGTTGTCTTTGCATTTGGACCCTTTTCCCCCCTGTATATGCTGTGTACTGGCTATGTATTTGCCTAGTTCAATTATTTCTGGCCTTGATTTGTCATTTTGTCTTCAAATATTACTTGGAAACGTACTTCAATTAATTTTTGTATTTGTTGCTTATTTTAAAATACAATCAATTTTATGATATTTGGAAATTATTTGATCCATGTTACCAGTCCTAAGTGGTACATTTTTTGAATTGTGGAGCATAATTTGTATAATTGTATCAAACCGTAAGATTTAGATGATATATAGTATTCAATATAATTATTTCAAACTACAAATAGATAAAACAAAATTATTAGTTATATGTGAGTTTGTGAACCCTTTATTTTAGAAGAATGAAAACAAAGCAATGAAATAGCCTAATAGAGTCCATGAATTGAATGAATGGGTGGCAAAAATAATCAAATAGGACAAGTTTAAAAATGCTCCTTCAATTCCTTTTCATTTAACAATTTTAGCTTATATGACTTTTCAAATTTTTGAGAATAGATGTGAG

Coding sequences of Glyma10g40620

Limit To All Plant Sequences

>Glyma10g40620.1   sequence type=CDS   gene model=Glyma10g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTGGCTGCGAGACAACGTCACAGAGAGAGAAGGGAAGGAAAAGTGGTGTTGGTGGTTGTCCTCCTCATTGGTATGGCAACCCTTTCCTCCATCCTCTCCTCCTCTCTTCCTCTTTTCCATCGCTACCCTAACCCTAACCCTTCGCTCTTTCGCCCCTCCCTTTCTCTCTCTTTCTCTCGCACTAAACCCCGTTCCCCCTTCCTCGTTCTCGCTGCCTCTTCCCATGATTTCGCCTCCAACTCCAAGAAATCAGTGCTCACCGAGTTGATACAAGAGATAGAACCTCTGGATGTTAGCCACATTCAGAAGGATGTTCCACCAACTACAGCAGATGCCATGAAGAGGACTATATCTGGTATGCTGGGCTTGCTTCCGTCTGATCAATTTCATGTTGTCATTGAGGCCTTGTGGGAACCTCTCTCCAAGTTACTGATTTCTTCAATGATGACTGGGTATACACTACGGAATGTTGAATATAGGCTTTGTCTTGAGAAAAACCTTGATATGTTTGAAGGAGATATAGAGAAGCCAAAGGCAGAGAGTATGAAAGTGGACTTACAAGGGTTGATGCATGACAGTGTAAATGCAATTGAGTTTGGTAAAAATAAGAATTTGTCTTCCAAAGTTGAAAAGCTTCATGAGGAAGCTGACATTCAAGAGCTTGGTGAAATATCTGCTGAAGCTCAACAATATATTTTTAATTTGCAATCTCGTTTGTCTTCTATGAAAAAGGAGCTGCATGAAGTAAAGAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGAGAAGAAAAGAACGATTTATTGGATTACTTGAGATCTCTTCAACCTGAACAGGTTGCTCAGCTTTCAGAATTTACATCCCCTGAGCTTAAGGACACTATCCTCTCTGTTGTCCATGGTCTCCTAGCTACTCTTTCTCCTAAGATGCATTCTAAACCTTCCACCATGTCAGAAAATACAACAGTTGGAGCAACAAATGCTGGGAGTGAGGATTGTGCTGAGGTTCTTGAGAACTCTGCTCTTCAATTTCAGCCTGTTATTTCATTAACTCGGGATTATCTTGCTCGCCTGCTCTTTTGGTGCATGCTGTTGGGACACTATCTTAGAGGGCTTGAGTGTCGATTGGAGTTGACGGATTTGCTTTCCTTGACAAGTGATGCCGAGAATGATGTTTCTGGCAGTCAACCAATTGCTTGA

>Glyma10g40620.2   sequence type=CDS   gene model=Glyma10g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTGGCTGCGAGACAACGTCACAGAGAGAGAAGGGAAGGAAAAGTGGTGTTGGTGGTTGTCCTCCTCATTGGTATGGCAACCCTTTCCTCCATCCTCTCCTCCTCTCTTCCTCTTTTCCATCGCTACCCTAACCCTAACCCTTCGCTCTTTCGCCCCTCCCTTTCTCTCTCTTTCTCTCGCACTAAACCCCGTTCCCCCTTCCTCGTTCTCGCTGCCTCTTCCCATGATTTCGCCTCCAACTCCAAGAAATCAGTGCTCACCGAGTTGATACAAGAGATAGAACCTCTGGATGTTAGCCACATTCAGAAGGATGTTCCACCAACTACAGCAGATGCCATGAAGAGGACTATATCTGGTATGCTGGGCTTGCTTCCGTCTGATCAATTTCATGTTGTCATTGAGGCCTTGTGGGAACCTCTCTCCAAGTTACTGATTTCTTCAATGATGACTGGGTATACACTACGGAATGTTGAATATAGGCTTTGTCTTGAGAAAAACCTTGATATGTTTGAAGGAGATATAGAGAAGCCAAAGGCAGAGAGTATGAAAGTGGACTTACAAGGGTTGATGCATGACAGTGTAAATGCAATTGAGTTTGGTAAAAATAAGAATTTGTCTTCCAAAGTTGAAAAGCTTCATGAGGAAGCTGACATTCAAGAGCTTGGTGAAATATCTGCTGAAGCTCAACAATATATTTTTAATTTGCAATCTCGTTTGTCTTCTATGAAAAAGGAGCTGCATGAAGTAAAGAGGAAAAGTGCTGCTCTTCAAATGCAACAGTTTGTTGGAGAAGAAAAGAACGATTTATTGGATTACTTGAGATCTCTTCAACCTGAACAGGTTTTTCCTTTTTCCTGA

Predicted protein sequences of Glyma10g40620

Limit To All Plant Sequences

>Glyma10g40620.1   sequence type=predicted peptide   gene model=Glyma10g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IVAARQRHRERREGKVVLVVVLLIGMATLSSILSSSLPLFHRYPNPNPSLFRPSLSLSFSRTKPRSPFLVLAASSHDFASNSKKSVLTELIQEIEPLDVSHIQKDVPPTTADAMKRTISGMLGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLRNVEYRLCLEKNLDMFEGDIEKPKAESMKVDLQGLMHDSVNAIEFGKNKNLSSKVEKLHEEADIQELGEISAEAQQYIFNLQSRLSSMKKELHEVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEQVAQLSEFTSPELKDTILSVVHGLLATLSPKMHSKPSTMSENTTVGATNAGSEDCAEVLENSALQFQPVISLTRDYLARLLFWCMLLGHYLRGLECRLELTDLLSLTSDAENDVSGSQPIA*

>Glyma10g40620.2   sequence type=predicted peptide   gene model=Glyma10g40620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IVAARQRHRERREGKVVLVVVLLIGMATLSSILSSSLPLFHRYPNPNPSLFRPSLSLSFSRTKPRSPFLVLAASSHDFASNSKKSVLTELIQEIEPLDVSHIQKDVPPTTADAMKRTISGMLGLLPSDQFHVVIEALWEPLSKLLISSMMTGYTLRNVEYRLCLEKNLDMFEGDIEKPKAESMKVDLQGLMHDSVNAIEFGKNKNLSSKVEKLHEEADIQELGEISAEAQQYIFNLQSRLSSMKKELHEVKRKSAALQMQQFVGEEKNDLLDYLRSLQPEQVFPFS*

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