Glyma10g40550 - SoyBase

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Report for Sequence Feature Glyma10g40550

Feature Type:	gene_model
Chromosome:	Gm10
Start:	47935403
stop:	47938787
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g40550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33920	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr4:16260876-16262703 FORWARD LENGTH=380	SoyBase	E_val: 0	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0052542	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response by callose deposition	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0700	KOG	Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF97	Panther	PROTEIN PHOSPHATASE-2C	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9SNB4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9SNB4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LEG7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEG7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g40550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g40550

Paralog	Evidence	Comments
Glyma20g26770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g40550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g259400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g40550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g40550

Limit To All Plant Sequences

>Glyma10g40550.1   sequence type=CDS   gene model=Glyma10g40550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCGTTTGTGCTACGGCCCTCTGGATTGCTGCTTCCGACGCCGCCGTGCCGACGGACTCCTCTGGCACACCGACTTGAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCCCAGGCCAATTACTGTCTCGAGGATCAGAGCCAAGTCTTCACCTCCCCCTACGCCACCTACGTCGGCGTCTACGACGGCCACGGCGGCCCCGAAGCTTCTCGATTCGTCAACAAGCGCCTCTTCCCTTATTTGCACAAATTCGCAACTGAGCAAGGAGGGTTGTCTGTGGATGTGATAAAAAAGGCATTCAGTGCCACAGAGGAGGAATTCTTGCATTTGGTGAAGCTATCCTTGCCCATTAGTCCCCAGATTGCTTCCGTCGGATCCTGTTGCCTTTTTGGTGCAATTTCTAATAATGTGTTGTATGTTGCCAACCTCGGCGACTCGAGAGCTGTTCTTGGCAGGAGGGATACGGTGAGAAAGAACAGTCCAGTGGTGGCACAGCGTTTGTCAACAGATCATAATGTAGCTGATGAAGAGGTGAGAAAAGAAGTTGAAGCTCTCCATCCTGATGACTCGCACATTGTGGTTTATAACCGTGGAGTTTGGAGGATTAAGGGCATTATACAGGTGTCAAGATCTATCGGTGACGTGTATTTGAAGAAACCTGATTTCTACCGAGACCCGGTTTTTCAGCAGTTTGGAAATCCTATTCCTTTGAAGCGTCCTGTAATGACAGCTGAACCATCAATCATTATTAGGGAGCTTGAGTCTCAGGATTTATTCTTGATATTTGCATCAGATGGCCTCTGGGAACAATTAAGTGACGAGGCAGCAGTTCAGATCGTTTTCAAACATCCAAGAGCTGGAATTGCCAAGAGACTGGTGAGAGCTGCTCTTCATGAAGCTGCAAAGAAGAGAGAGATGAGATACGATGACATAAAGAAAATTGACAAAGGAATAAGACGACACTTCCATGATGATATCACTGTAGTTGTAATCTATCTTGATCACCATGCAGGCTCCTCTAATGGTAGATTTAAGCAAACTGGTGTTGACTATACAACTGCCCCTGTTGATATTTTTTCCCTTAATGCGGATGAAGCAGAAAAGCGTATGCTTGGTACAGTTGCCTAA

Predicted protein sequences of Glyma10g40550

Limit To All Plant Sequences

>Glyma10g40550.1   sequence type=predicted peptide   gene model=Glyma10g40550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLRLCYGPLDCCFRRRRADGLLWHTDLKPHASGDFSIAVAQANYCLEDQSQVFTSPYATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSLPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDTVRKNSPVVAQRLSTDHNVADEEVRKEVEALHPDDSHIVVYNRGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPVMTAEPSIIIRELESQDLFLIFASDGLWEQLSDEAAVQIVFKHPRAGIAKRLVRAALHEAAKKREMRYDDIKKIDKGIRRHFHDDITVVVIYLDHHAGSSNGRFKQTGVDYTTAPVDIFSLNADEAEKRMLGTVA*

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