Report for Sequence Feature Glyma10g40490
Feature Type: gene_model
Chromosome: Gm10
Start: 47889581
stop: 47892375
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g40490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G43740 AT
Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein | chr3:15644127-15645446 FORWARD LENGTH=218
SoyBase E_val: 1.00E-96 ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF836 Panther
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
PF08263 PFAM
Leucine rich repeat N-terminal domain
JGI ISS
UniRef100_C6SZB6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SZB6_SOYBN
SoyBase E_val: 4.00E-150 ISS
UniRef100_C6ZS01 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat family protein n=1 Tax=Glycine max RepID=C6ZS01_SOYBN
SoyBase E_val: 2.00E-136 ISS
Expression Patterns of Glyma10g40490
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g40490
Paralog Evidence Comments
Glyma20g26840 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g40490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g258800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g40490
Transcripts of Glyma10g40490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g40490.2 sequence type=transcript gene model=Glyma10g40490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGAACTTAATATTCAAAGCTCTTCTTATGGCTAGCTAGATCATATTATGTTTTTTTTTGTTTCAATTGTTTGGTTTTCCTTTTTTCATTCTTTTTTTGTTTCAAAATGACCTATTTTATTTCTTTGGCCTCTTCTTAGCTAGCAAGCAGACTTAAGCTTGGCCTTAATAGTTTTGATTTGATCCAAATAATTTGCGTAGGGAACGCTCTGCATGCTTTGAGAAGCAGGCTTTCTGATCCCAACAATATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGAAGAAAGATAGAAATCGCATTATTATCATCTAAACAGATTGCAATGAAGAGGCTTAGTTTACGTAGGGAGAAAGGGAAAGGATGGTGTTATTTTCAGATCAATATTTCCTCACCATTTTTACACTTTTCTTAACTGAAAAAAGGGAGTATGAGTTGGAATCTACGTTTTTCTTATTTTATTATAAAAAAAGGAAGCTATGTAAGAATGCTCTGAAAATAATTGTATGTAAATAACATTATTGATGTATGCTTGACTCGAATATGAATCTAAAAATATCAAACTTGCATGTCGATTTATATAATAACATGATTGTACCACCTCTCTTTGATTGTTTGTAGCATGACATGGTTTTGTAGTAAG
Coding sequences of Glyma10g40490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g40490.1 sequence type=CDS gene model=Glyma10g40490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACCTTTCGTTTCCCTCTCTTTGTTGCTTCTCTTTCTCAACCACCCCCTCCTTTCCCTCTCAACCAACCCTGAAGGGAACGCTCTGCATGCTTTGAGAAGCAGGCTTTCTGATCCCAACAATATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA
>Glyma10g40490.2 sequence type=CDS gene model=Glyma10g40490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA
Predicted protein sequences of Glyma10g40490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g40490.1 sequence type=predicted peptide gene model=Glyma10g40490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAPFVSLSLLLLFLNHPLLSLSTNPEGNALHALRSRLSDPNNMLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNEITGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTDLKIFDVSNNDLCGTIPVEGNFESFPMESFKNNRFSGPELKGLVPYDFGC*
>Glyma10g40490.2 sequence type=predicted peptide gene model=Glyma10g40490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNEITGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTDLKIFDVSNNDLCGTIPVEGNFESFPMESFKNNRFSGPELKGLVPYDFGC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
