Glyma10g40490 - SoyBase

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Report for Sequence Feature Glyma10g40490

Feature Type:	gene_model
Chromosome:	Gm10
Start:	47889581
stop:	47892375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g40490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G43740	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat (LRR) family protein \| chr3:15644127-15645446 FORWARD LENGTH=218	SoyBase	E_val: 1.00E-96	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF836	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C6SZB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6SZB6_SOYBN	SoyBase	E_val: 4.00E-150	ISS
UniRef100_C6ZS01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat family protein n=1 Tax=Glycine max RepID=C6ZS01_SOYBN	SoyBase	E_val: 2.00E-136	ISS

Expression Patterns of Glyma10g40490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g40490

Paralog	Evidence	Comments
Glyma20g26840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g40490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g258800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g40490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g40490

Limit To All Plant Sequences

>Glyma10g40490.2   sequence type=transcript   gene model=Glyma10g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAACTTAATATTCAAAGCTCTTCTTATGGCTAGCTAGATCATATTATGTTTTTTTTTGTTTCAATTGTTTGGTTTTCCTTTTTTCATTCTTTTTTTGTTTCAAAATGACCTATTTTATTTCTTTGGCCTCTTCTTAGCTAGCAAGCAGACTTAAGCTTGGCCTTAATAGTTTTGATTTGATCCAAATAATTTGCGTAGGGAACGCTCTGCATGCTTTGAGAAGCAGGCTTTCTGATCCCAACAATATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGAAGAAAGATAGAAATCGCATTATTATCATCTAAACAGATTGCAATGAAGAGGCTTAGTTTACGTAGGGAGAAAGGGAAAGGATGGTGTTATTTTCAGATCAATATTTCCTCACCATTTTTACACTTTTCTTAACTGAAAAAAGGGAGTATGAGTTGGAATCTACGTTTTTCTTATTTTATTATAAAAAAAGGAAGCTATGTAAGAATGCTCTGAAAATAATTGTATGTAAATAACATTATTGATGTATGCTTGACTCGAATATGAATCTAAAAATATCAAACTTGCATGTCGATTTATATAATAACATGATTGTACCACCTCTCTTTGATTGTTTGTAGCATGACATGGTTTTGTAGTAAG

Coding sequences of Glyma10g40490

Limit To All Plant Sequences

>Glyma10g40490.1   sequence type=CDS   gene model=Glyma10g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACCTTTCGTTTCCCTCTCTTTGTTGCTTCTCTTTCTCAACCACCCCCTCCTTTCCCTCTCAACCAACCCTGAAGGGAACGCTCTGCATGCTTTGAGAAGCAGGCTTTCTGATCCCAACAATATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA

>Glyma10g40490.2   sequence type=CDS   gene model=Glyma10g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGCAGAGTTGGGACCCAACACTGGTTAATCCCTGTACTTGGTTTCATGTTACCTGTGACTCCAACAATCATGTGATTCGCTTAGACTTGGGCAACTCTAACGTTTCTGGAACTCTGGGCCCAGAACTTGGCCAGCTACAGCATCTGCAGTACTTGGAGCTCTACAGGAATGAGATAACAGGAAAGATTCCTAAGGAACTTGGTAACTTGAAATCACTTATTAGCATGGATTTGTATGATAACAAGTTGGAGGGTAAAATTCCAAAATCATTTGGAAAGTTGAAGTCACTTAAATTCTTGCGGCTAAACAACAACAAGTTGACAGGATCCATCCCAAGAGAACTCACTCGTCTCACTGATCTCAAAATCTTTGATGTTTCTAATAATGATCTCTGTGGAACAATACCAGTTGAGGGAAACTTTGAATCTTTCCCAATGGAAAGTTTTAAAAACAACAGGTTTAGTGGTCCCGAGCTGAAAGGACTTGTTCCATATGATTTTGGATGCTGA

Predicted protein sequences of Glyma10g40490

Limit To All Plant Sequences

>Glyma10g40490.1   sequence type=predicted peptide   gene model=Glyma10g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPFVSLSLLLLFLNHPLLSLSTNPEGNALHALRSRLSDPNNMLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNEITGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTDLKIFDVSNNDLCGTIPVEGNFESFPMESFKNNRFSGPELKGLVPYDFGC*

>Glyma10g40490.2   sequence type=predicted peptide   gene model=Glyma10g40490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLQSWDPTLVNPCTWFHVTCDSNNHVIRLDLGNSNVSGTLGPELGQLQHLQYLELYRNEITGKIPKELGNLKSLISMDLYDNKLEGKIPKSFGKLKSLKFLRLNNNKLTGSIPRELTRLTDLKIFDVSNNDLCGTIPVEGNFESFPMESFKNNRFSGPELKGLVPYDFGC*

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