SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33905 | AT | Annotation by Michelle Graham. TAIR10: Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr4:16254065-16255592 REVERSE LENGTH=261 | SoyBase | E_val: 2.00E-102 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009694 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005778 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| KOG1944 | KOG | Peroxisomal membrane protein MPV17 and related proteins | JGI | ISS | |
| PTHR11266 | Panther | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 | JGI | ISS | |
| PTHR11266:SF4 | Panther | PXMP-2 - RELATED | JGI | ISS | |
| PF04117 | PFAM | Mpv17 / PMP22 family | JGI | ISS | |
| UniRef100_I1LEF9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEF9_SOYBN | SoyBase | E_val: 1.00E-179 | ISS |
| UniRef100_Q9FPH4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: AT4g33900 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH4_ARATH | SoyBase | E_val: 1.00E-99 | ISS |
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Glyma10g40480 not represented in the dataset |
Glyma10g40480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g26850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g258700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g40480.1 sequence type=CDS gene model=Glyma10g40480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAGTGCTTTTCTAATGAACCCTGCCAAGATTCCTCATGCCATGATGCAGAGGCAGTTCATGTTGGTGAACCGTGCCATTCATCCCATCAAAACCCCTTCGTTTCATTTCCTCAAGAAACCAAGACAATATGGAATCTCTTCATCTTTTTGTTCTTCTTCTTCTTCTTCATCATCATCATCGTCTGCTGCAATTTCCATCTCCAAGGTTGGCTTTGTGGGTTGGTATTTGGGGATGATAAAGTCGTGGCCAATTTTGACAAAGAGTGTTACTTCTTCCCTTATTTACATCGCCGCTGATTTATCCTCTCAGACTATTGTGCGAGAATCTTCAGAACCTTTTGATTTTATAAGGACTTCACGCATGGCAGGATACGGGATGGTCATTTTAGGACCATCACTGCATTTCTGGTTCAATTTTGTGTCAAAGCTTTTCCCAAGGAGGGATCTTTTTTCTACATTGAAGAAAATGGTCATGGGTCAGACACTTTATGGACCTGCCATGACTGTTACTTTCTTCTCCTTGAATGCACGTTTGCAGGGTGAAACCGGCTCAGAGATTGCTGCACGCTTAAAACGTGATTTGCTTCCTACGATGTTAAGTGGAATTATGTACTGGCCTATATGTGATTTTATAACATTTAGGTTCATTCCTGTCCATTTACAGCCATTAGTCAGCAATTCATTTTCGTACTTGTGGACCGTTTATATAACCTATATGGCAAGCCTAGAGAAAGCGACCTGA
>Glyma10g40480.1 sequence type=predicted peptide gene model=Glyma10g40480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSAFLMNPAKIPHAMMQRQFMLVNRAIHPIKTPSFHFLKKPRQYGISSSFCSSSSSSSSSSSAAISISKVGFVGWYLGMIKSWPILTKSVTSSLIYIAADLSSQTIVRESSEPFDFIRTSRMAGYGMVILGPSLHFWFNFVSKLFPRRDLFSTLKKMVMGQTLYGPAMTVTFFSLNARLQGETGSEIAARLKRDLLPTMLSGIMYWPICDFITFRFIPVHLQPLVSNSFSYLWTVYITYMASLEKAT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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