Glyma10g40381 - SoyBase

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Report for Sequence Feature Glyma10g40381

Feature Type:	gene_model
Chromosome:	Gm10
Start:	47812327
stop:	47813801
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g40381

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G19590	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr3:6805798-6808374 FORWARD LENGTH=340	SoyBase	E_val: 1.00E-53	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0007094	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle spindle assembly checkpoint	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0000776	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: kinetochore	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009524	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR10971	Panther	MITOTIC CHECKPOINT PROTEIN AND POLY(A)+ RNA EXPORT PROTEIN	JGI		ISS
PTHR10971:SF5	Panther	POLY(A)+ RNA EXPORT PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7K0X2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mitotic checkpoint protein BUB3 n=2 Tax=Medicago truncatula RepID=G7K0X2_MEDTR	SoyBase	E_val: 4.00E-53	ISS
UniRef100_I3SCM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Lotus japonicus RepID=I3SCM4_LOTJA	SoyBase	E_val: 2.00E-55	ISS

Expression Patterns of Glyma10g40381

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g40381 not represented in the dataset	Glyma10g40381 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g40381 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g257700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g40381

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g40381

Limit To All Plant Sequences

>Glyma10g40381.2   sequence type=transcript   gene model=Glyma10g40381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAAGGTACGTATCATATCATATGCTCCTCTTTCTCAGTTTTCATTTACTCAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGTGATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCAAAAATATATGCTTTTAAGTGTCACAGAAAATCTGAGGCTGGAAGGGACATAGTCTATCCTGTGAATGCAATTGCATTCCACCCCATATATGGAACGTTTGCCACAGGAGTTTGTGACGGGTGTGTCAACGTGTGGGACGGAAACAATTAGAAGAGGCTATACCAGTACTCAGAATATCCTACCAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTTTTGGGCTTTGGTTGTTGCATCAAGTTACACATTCGAAGAAGGGCCTAAAGCAGGAACTACAGCGGAAGCTCTCTCTCTCTCACTGTTCAGTGTATATCTCTGGAATACGTGCTAGTTGTATGTAACTTGCTCTTTCCTTATTTCTTATACAGCGAGGAACAAGATGCTATCTACGTACGCAATGTGAACGAGATTGAGGTCAAGCCATAGCCCAAAGTCTATCCCAATCCTCCAGCGCGATTCCCAATGATGGCCTTTTCGAAAATAGGGATTTCTTCGTTTTTTGTTTCTACTGTTTCACTTCCCTCTCGTGAAGGCCAAAAACATGTGAACTATTGTTGTGAAGCACTAGCTTATTTTGTAGTTACAAATTGATAGTCCAGATTTCCTTCTAATTGTACACTACGTGCAAGTATGTCTATTGTAAAGTATAAATGAAACTGACAATATAACCTCAAGTGTTGTGCCT

>Glyma10g40381.3   sequence type=transcript   gene model=Glyma10g40381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAAGGTACGTATCATATCATATGCTCCTCTTTCTCAGTTTTCATTTACTCAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGTGATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCAAAAATATATGCTTTTAAGTGTCACAGAAAATCTGAGGCTGGAAGGGACATAGTCTATCCTGTGAATGCAATTGCATTCCACCCCATGTAAGTGTTTTAGAATTTGGAGTGCTCTGTCACCTTGATTATATCATCTCCTTAAATAAGAAGGCACTCTGTGAAGAAGATTTTAAATTGCTTGCTTAATT

Coding sequences of Glyma10g40381

Limit To All Plant Sequences

>Glyma10g40381.1   sequence type=CDS   gene model=Glyma10g40381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAAGGTACGTATCATATCATATGCTCCTCTTTCTCAGTTTTCATTTACTCAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGTGATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCAAAAATATATGCTTTTAAGTGTCACAGAAAATCTGAGGCTGGAAGGGACATAGTCTATCCTGTGAATGCAATTGCATTCCACCCCATATATGGAACGTTTGCCACAGGAGTTTGTGACGGGTGTGTCAACTACTCAGAATATCCTACCAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTTTTGGGCTTTGGTTGTTGCATCAACGAGGAACAAGATGCTATCTACGTACGCAATGTGAACGAGATTGAGGTCAAGCCATAG

>Glyma10g40381.2   sequence type=CDS   gene model=Glyma10g40381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAAGGTACGTATCATATCATATGCTCCTCTTTCTCAGTTTTCATTTACTCAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGTGATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCAAAAATATATGCTTTTAAGTGTCACAGAAAATCTGAGGCTGGAAGGGACATAGTCTATCCTGTGAATGCAATTGCATTCCACCCCATATATGGAACGTTTGCCACAGGAGTTTGTGACGGGTGTGTCAACGTGTGGGACGGAAACAATTAG

>Glyma10g40381.3   sequence type=CDS   gene model=Glyma10g40381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACAAGGTACGTATCATATCATATGCTCCTCTTTCTCAGTTTTCATTTACTCAGGATATGCACTTAGTTCTGTTGAAGGGCGGGTTGTGATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCAAAAATATATGCTTTTAAGTGTCACAGAAAATCTGAGGCTGGAAGGGACATAGTCTATCCTGTGAATGCAATTGCATTCCACCCCATGTAA

Predicted protein sequences of Glyma10g40381

Limit To All Plant Sequences

>Glyma10g40381.1   sequence type=predicted peptide   gene model=Glyma10g40381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQGTYHIICSSFSVFIYSGYALSSVEGRVVMEFFDLSEASQAKIYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGVCDGCVNYSEYPTSIAALSFSRDGRLLGFGCCINEEQDAIYVRNVNEIEVKP*

>Glyma10g40381.2   sequence type=predicted peptide   gene model=Glyma10g40381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQGTYHIICSSFSVFIYSGYALSSVEGRVVMEFFDLSEASQAKIYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGVCDGCVNVWDGNN*

>Glyma10g40381.3   sequence type=predicted peptide   gene model=Glyma10g40381   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRQGTYHIICSSFSVFIYSGYALSSVEGRVVMEFFDLSEASQAKIYAFKCHRKSEAGRDIVYPVNAIAFHPM*

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