SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G14835 | AT | Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:6367238-6370610 FORWARD LENGTH=343 | SoyBase | E_val: 9.00E-174 | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG3970 | KOG | Predicted E3 ubiquitin ligase | JGI | ISS | |
| PTHR12981 | Panther | ZINC FINGER PROTEIN-LIKE 1 | JGI | ISS | |
| UniRef100_C6T770 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T770_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7IET7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein-like protein n=2 Tax=Medicago truncatula RepID=G7IET7_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma10g40370 not represented in the dataset |
Glyma10g40370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g26970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g257600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g40370.2 sequence type=transcript gene model=Glyma10g40370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAAACAGAAACTTTGGTCGTCTATTTGGTCTAGTAGCGAATGCTGTGGCCCATGTTTCTAACCCGGCTTCTAGACTTTTTTTTTTTTGGATTTATTTTTCTACACCTGTTATGGAAATAATTAATTAACAGAAGGAAAAAAGAAAAAGAAAAAAGAAAAACTCAAACGGATCTCAATTGCAAACGCAGGAAAGGGGTTTTTGTTTCGCAGTGAGCTGAGCCTATTATCAACACAAGCAATAATTTCAGTAAATCAAGACAATTTTTTTTTTTTTTTGTCTCCGTGATTACGATTATTTGATCATGCTCTTCGCTTCAGTTTTACTTTCCAAATCCACCTGAATAAAATTTTCTGAATCACATCAGATTCAATTGAATTATACCCCTCAATGCAATGGTGGTCTGCAAATGTCGCAAGGCTACTAAGTTATATTGCTTCGTGCACAAAGTTCCTGTCTGTGGGGAATGTATCTGCTTCCCGGAGCACCAAATCTGCGTGGTCCGGACTTATTCGGAATGGGTTATAGATGGGGAGTATGATTGGCCCCCAAAATGCTGCCAATGCCAGTCTGTTTTGGAAGAGGGGGATGGATCTCAAACAACTCGACTGGGTTGCTTGCATGTTATCCACACAAATTGCTTGGTCTCGCATATCAAGAGTTTTCCTCCACATACTGCCCCTGCAGGATATGCGTGTCCTTCATGTTCTACTTCAATATGGCCTCCTAAAAGTGTGAAAGATTCAGGATCACGTCTTCATTCCAAGTTGAAGGAAGCTATCATGCAGTCTGGTATGGAGAAGAATGTTTTTGGAAATCATCCTGTATCAGTGACAGAATCACGAAGTCCTCCACCTGCTTTTGCTTCAGATCCGTTGATTAGTAGGGAAAATCATGGAAACTCAGACTCAGTTGATGGATACTCAACTACAACTCGATCAGAACTACCTAAACTTTCAGTGACAGATATTGTGGAGATAGATGGTGCTAATCCAGCAGGAGATTTCTTGAAAAACTCAAGTCCTGTTGGTCCTGGTGCCACCACAAGGAAGGGCTCAGTCCACGTTGAACGACAGAATTCTGAAATTTCTTACTATGCTGATGATGAAGATGCAAATCGTAAAAAGTACACAAAACGAGGTGATATTGTCTTTTGAATGATTTTTTAATATTTTAAAATTTTGTGATTAATACTTGACATATTTGTTTATTCGAACTTTCTTCTTCGAAAGTGTAGGTCCATTCCACCATAAGTTTCTTAGAGCTTTACTTCCTTTCTGGTCTACTGCTTTACCTACTCTACCAGTGACTGCACCTCCAAGGAAAGATGCATCAAATGCAGCCGAAACCTCGGAAGGCCGTACAAGGCATCAAAGATCATCAAGGATGGACCCCAGAAAAATTCTTCTCCTGATTGCTATTATGGCTTGCATGGCAACTATGGGTATACTGTATTACAGACTAGCACAACGGGGTCCAGGGGATGAGCTTCGTAATGATGAATAAATTTGCATGCCATGGAGTGAGTGCTCTTAAAGTTTGGAGATGTTCAGCGGCTCCTATTTTCAATATTGCTGGTTACTGTTGCTTCTTATATCTGTTTGGCTTCTTTATTTGGACCAGTCGCAGTCTTGGCAAACATACAAGTTGTAGTTTGTTGATAATTTTTCATCTGGAATGCCTATGACAGTGACATGTTACATAAAATCCTAGTCAGCCATCTTTGCTCTTTGCCCTCAGTTTTGGTGTCCACTTGGAATGTAATTGCATAATATTCAGATTTAAATATTGTTCTCTTAATTGGATTAGTTGTCTCCACCATTTCAAAAATCAATTGCTAGACGGCCCGCGTATATCTATGGTTGTTTTATACTCCCTCCATTTCAAATTGATTGATGTTTTCAGTTTTTAAAAAGATATTAAAATATCTATTTTAATTTTGTCCTCTAATAAATATTATAGACTTGAACATTTATTGAAATTGAGAGAGTAAAAGGATTTTAGTAAAATTGTCTCCTAGTAAATACTATTGTCTTGAAATATTGGTTTACTTAATCTGGGTGAAAAAACTTTGAACATCAATCATTTTAAAATGGAGGGAATACAAAACAAGCTCATACAAGTTGTTATGTTTGCATTAATAACATCTTTTTTGATAGATGTGTAATATGAAAACATGATCATCTGCAATGCAGTGATAGTTTAGAATTCTC
>Glyma10g40370.1 sequence type=CDS gene model=Glyma10g40370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTCTGCAAATGTCGCAAGGCTACTAAGTTATATTGCTTCGTGCACAAAGTTCCTGTCTGTGGGGAATGTATCTGCTTCCCGGAGCACCAAATCTGCGTGGTCCGGACTTATTCGGAATGGGTTATAGATGGGGAGTATGATTGGCCCCCAAAATGCTGCCAATGCCAGTCTGTTTTGGAAGAGGGGGATGGATCTCAAACAACTCGACTGGGTTGCTTGCATGTTATCCACACAAATTGCTTGGTCTCGCATATCAAGAGTTTTCCTCCACATACTGCCCCTGCAGGATATGCGTGTCCTTCATGTTCTACTTCAATATGGCCTCCTAAAAGTGTGAAAGATTCAGGATCACGTCTTCATTCCAAGTTGAAGGAAGCTATCATGCAGTCTGGTATGGAGAAGAATGTTTTTGGAAATCATCCTGTATCAGTGACAGAATCACGAAGTCCTCCACCTGCTTTTGCTTCAGATCCGTTGATTAGTAGGGAAAATCATGGAAACTCAGACTCAGTTGATGGATACTCAACTACAACTCGATCAGAACTACCTAAACTTTCAGTGACAGATATTGTGGAGATAGATGGTGCTAATCCAGCAGGAGATTTCTTGAAAAACTCAAGTCCTGTTGGTCCTGGTGCCACCACAAGGAAGGGCTCAGTCCACGTTGAACGACAGAATTCTGAAATTTCTTACTATGCTGATGATGAAGATGCAAATCGTAAAAAGTACACAAAACGAGGTCCATTCCACCATAAGTTTCTTAGAGCTTTACTTCCTTTCTGGTCTACTGCTTTACCTACTCTACCAGTGACTGCACCTCCAAGGAAAGATGCATCAAATGCAGCCGAAACCTCGGAAGGCCGTACAAGGCATCAAAGATCATCAAGGATGGACCCCAGAAAAATTCTTCTCCTGATTGCTATTATGGCTTGCATGGCAACTATGGGTATACTGTATTACAGACTAGCACAACGGGGTCCAGGGGATGAGCTTCGTAATGATGAATAA >Glyma10g40370.2 sequence type=CDS gene model=Glyma10g40370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTCTGCAAATGTCGCAAGGCTACTAAGTTATATTGCTTCGTGCACAAAGTTCCTGTCTGTGGGGAATGTATCTGCTTCCCGGAGCACCAAATCTGCGTGGTCCGGACTTATTCGGAATGGGTTATAGATGGGGAGTATGATTGGCCCCCAAAATGCTGCCAATGCCAGTCTGTTTTGGAAGAGGGGGATGGATCTCAAACAACTCGACTGGGTTGCTTGCATGTTATCCACACAAATTGCTTGGTCTCGCATATCAAGAGTTTTCCTCCACATACTGCCCCTGCAGGATATGCGTGTCCTTCATGTTCTACTTCAATATGGCCTCCTAAAAGTGTGAAAGATTCAGGATCACGTCTTCATTCCAAGTTGAAGGAAGCTATCATGCAGTCTGGTATGGAGAAGAATGTTTTTGGAAATCATCCTGTATCAGTGACAGAATCACGAAGTCCTCCACCTGCTTTTGCTTCAGATCCGTTGATTAGTAGGGAAAATCATGGAAACTCAGACTCAGTTGATGGATACTCAACTACAACTCGATCAGAACTACCTAAACTTTCAGTGACAGATATTGTGGAGATAGATGGTGCTAATCCAGCAGGAGATTTCTTGAAAAACTCAAGTCCTGTTGGTCCTGGTGCCACCACAAGGAAGGGCTCAGTCCACGTTGAACGACAGAATTCTGAAATTTCTTACTATGCTGATGATGAAGATGCAAATCGTAAAAAGTACACAAAACGAGGTGATATTGTCTTTTGA
>Glyma10g40370.1 sequence type=predicted peptide gene model=Glyma10g40370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQSVLEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPSCSTSIWPPKSVKDSGSRLHSKLKEAIMQSGMEKNVFGNHPVSVTESRSPPPAFASDPLISRENHGNSDSVDGYSTTTRSELPKLSVTDIVEIDGANPAGDFLKNSSPVGPGATTRKGSVHVERQNSEISYYADDEDANRKKYTKRGPFHHKFLRALLPFWSTALPTLPVTAPPRKDASNAAETSEGRTRHQRSSRMDPRKILLLIAIMACMATMGILYYRLAQRGPGDELRNDE* >Glyma10g40370.2 sequence type=predicted peptide gene model=Glyma10g40370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVIDGEYDWPPKCCQCQSVLEEGDGSQTTRLGCLHVIHTNCLVSHIKSFPPHTAPAGYACPSCSTSIWPPKSVKDSGSRLHSKLKEAIMQSGMEKNVFGNHPVSVTESRSPPPAFASDPLISRENHGNSDSVDGYSTTTRSELPKLSVTDIVEIDGANPAGDFLKNSSPVGPGATTRKGSVHVERQNSEISYYADDEDANRKKYTKRGDIVF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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