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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21410 | AT | Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 29 | chr4:11402463-11405025 REVERSE LENGTH=679 | SoyBase | E_val: 7.00E-43 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| PTHR11795 | Panther | PROTEIN KINASE | JGI | ISS | |
| PTHR11795:SF83 | Panther | RECEPTOR SERINE/THREONINE PROTEIN KINASE-RELATED | JGI | ISS | |
| PTHR24420 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24420:SF430 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01657 | PFAM | Domain of unknown function DUF26 | JGI | ISS | |
| PF07714 | PFAM | Protein tyrosine kinase | JGI | ISS | |
| UniRef100_G8A0W3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=2 Tax=Medicago truncatula RepID=G8A0W3_MEDTR | SoyBase | E_val: 5.00E-88 | ISS |
| UniRef100_UPI000233CC42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CC42 related cluster n=1 Tax=unknown RepID=UPI000233CC42 | SoyBase | E_val: 0 | ISS |
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Glyma10g39950 not represented in the dataset |
Glyma10g39950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g253400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g39950.3 sequence type=transcript gene model=Glyma10g39950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCCGTTGTATCTTAGACTTGATTTTGGGAAAGTCTAAAAACCCTTAGAAATTGTTGATCTTTTCCACCCTTTCATTTAAAATCCACCAACTCTTTAGTAAGTGTAATTCATATTACAACATTGTATGGTAGCATCATGGTCACTCAAAGAGCATCATTTTACCTTTGTCTCCTTGTTATTCTGATAACTCAAGCTACTGCGGAGCCAGACGACCAATACCCAGTCTGCCTCAGTCGTGGAGGAGACTATGCCCCTAATAGCACCTATCACACCAACCTCAATACTGTTCTTTCAAGGCTCACTTCCAACACGCAAATCGACTATGGCTTCTACAATTCCTCCTACGGCCAAGACTCTGATAGAGTCTACGCAACAGGCCTTTGCAGAGGAGATGTTTCCCGACATACTTGCCTTACTTGCCTCAACAATTCTAGCTTTTTTCTCCTAAAGAACTGTCCACATCAGAAGGAGGCTGTGGGATTTGGAGGATATGATAAATGCATTTTACACTATGCAGATCAGTCAATGTTCAGTTACCAAGATTCTTCTTTCCGGTTCTATTTTTGGGAGGAAACTAATGTAACGAATTGGGATCAGTACAGTTATGTGCTCAATCAGTTGCTGTCAAGACTAAGAGTGAAAGCTGCAACATCTAACTCCAATCTCAACCGTAAATTTGCTGCTGGAAATGCAACAGTTCCGACTCCGAGTTCCCAAACTATATATGCTGTTGTTCAGTGCTATCCTGATCTGACAGCCGCAGAATGCAACGACTGCTTAATTGGCGCTTTCTCAGAAATACCCAAAAATTGTAATAACAGGTCAGGTTGTGGAGTTACTATATTAAGCTGTAACTTTAGATATGAGAACTCCAGCTTCTATGAGCCTACGCCTGATACGATAACACTACAATTTTCACCACAAGGATCTCCATCTCCTACACCATCCATCACTTCAAATTCCTCAGAGAGTACTTATCATGGAAAAAGCAGCAAATCTCAAGCTGTCAACGCCAAATACGTTGTCGCACCTATTCTATTCTTTGTTGGGTTGCTGATCTTGATTTGCATCTATTTAAGAGTAAGGAAGCCAACAAAGCATTTTGAGAGTGAAACCATGGTTGATGACGAAATTAAACTAGTCGTGTCATCACAGTTTGACTTTGACACCATAAGAGTCGCTACGAACAACTTCTCTGATGCAAACAAGCTTGGACAAGGTGGATTTGGACCTGTTTACAGGGGACACTCTTCAATAAACAAGAAGTAGCAATCAAAAGGTTATCTAGCAACTCTTGCCAAGGAAATATTGAATTCAAGAATGAAGTGATACTAATGTCCAGGCTTCAGCACCGAAATTTAGTTAGGCTCCTTGGTTTTTGTTATGAAAGCGAAGAACGGCTCCTTGTCTATGAGTTTCTTCCCAATAAAAGTCTTGACAAGATCATATTTGTGGATACATGGCACCTGAGTATGCAAGGCATGGAAAACTCTCAACGAAGTTAGATGTCTTTAGTTTCGGTGTAGTAATACTAGAGATTGTAAGTGGCAAAAAGAATAGTGGATTTCGTATTGGAGAGAGTGTGGAGCATTTATTAAGCTTTGCTTGGAAAAACTGGACGAAAGGGACAGCAGATAAAATTATAGATCCTGCCTTAAATAATGCTTTGAGAGATGAAATACTGAGATGCATTCACATTGGGCTACTTTGTGTTCAAGAAAAGGTTGCTGATAGACCAACAATGGCTTCAGTTATACTTATGCTTGATAGCCACTCTTTTGCTCTACCAGTTCCATTGCAACCGGCCTATTTTATGAAAAATAGTTGTTTATCAGTCATCCAGTTTTCGGGGTGCAGTTCCGTGGAAACAGGATCAAATGAACAGAAAAGTGACTCTGCTGATGTATCAGCAAATGAGGCCTCAATTAGTAGTCTATATCCTCGTTAGATATGAATCACATTATTTTAGTCAAAGGTGACAATCATAGCTACAATTGAATGTACTAAGAGAAACAGAAGTTTGGTGCTTGCTATTACTAATTAAGAAAGGAATAATTTTGACACCATTTCCGTGAAAATATTCAATTTACTAATTACCCGTATCCAAACTCTTATGTTTGTTCCTGTTACAATTAGGGAATTACAAAAATTGGG
>Glyma10g39950.2 sequence type=CDS gene model=Glyma10g39950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCACTCAAAGAGCATCATTTTACCTTTGTCTCCTTGTTATTCTGATAACTCAAGCTACTGCGGAGCCAGACGACCAATACCCAGTCTGCCTCAGTCGTGGAGGAGACTATGCCCCTAATAGCACCTATCACACCAACCTCAATACTGTTCTTTCAAGGCTCACTTCCAACACGCAAATCGACTATGGCTTCTACAATTCCTCCTACGGCCAAGACTCTGATAGAGTCTACGCAACAGGCCTTTGCAGAGGAGATGTTTCCCGACATACTTGCCTTACTTGCCTCAACAATTCTAGCTTTTTTCTCCTAAAGAACTGTCCACATCAGAAGGAGGCTGTGGGATTTGGAGGATATGATAAATGCATTTTACACTATGCAGATCAGTCAATGTTCAGTTACCAAGATTCTTCTTTCCGGTTCTATTTTTGGGAGGAAACTAATGTAACGAATTGGGATCAGTACAGTTATGTGCTCAATCAGTTGCTGTCAAGACTAAGAGTGAAAGCTGCAACATCTAACTCCAATCTCAACCGTAAATTTGCTGCTGGAAATGCAACAGTTCCGACTCCGAGTTCCCAAACTATATATGCTGTTGTTCAGTGCTATCCTGATCTGACAGCCGCAGAATGCAACGACTGCTTAATTGGCGCTTTCTCAGAAATACCCAAAAATTGTAATAACAGGTCAGGTTGTGGAGTTACTATATTAAGCTGTAACTTTAGATATGAGAACTCCAGCTTCTATGAGCCTACGCCTGATACGATAACACTACAATTTTCACCACAAGGATCTCCATCTCCTACACCATCCATCACTTCAAATTCCTCAGAGAGTACTTATCATGGTGAAACCATGGTTGATGACGAAATTAAACTAGTCGTGTCATCACAGTTTGACTTTGACACCATAAGAGTCGCTACGAACAACTTCTCTGATGCAAACAAGCTTGGACAAGGTGGATTTGGACCTGTTTACAGTGGATACATGGCACCTGAGTATGCAAGGCATGGAAAACTCTCAACGAAGTTAGATGTCTTTAGTTTCGGTGTAGTAATACTAGAGATTGTAAGTGGCAAAAAGAATAGTGGATTTCGTATTGGAGAGAGTGTGGAGCATTTATTAAGCTTTGCTTGGAAAAACTGGACGAAAGGGACAGCAGATAAAATTATAGATCCTGCCTTAAATAATGCTTTGAGAGATGAAATACTGAGATGCATTCACATTGGGCTACTTTGTGTTCAAGAAAAGGTTGCTGATAGACCAACAATGGCTTCAGTTATACTTATGCTTGATAGCCACTCTTTTGCTCTACCAGTTCCATTGCAACCGGCCTATTTTATGAAAAATAGTTGTTTATCAGTCATCCAGTTTTCGGGGTGCAGTTCCGTGGAAACAGGATCAAATGAACAGAAAAGTGACTCTGCTGATGTATCAGCAAATGAGGCCTCAATTAGTAGTCTATATCCTCGTTAG >Glyma10g39950.3 sequence type=CDS gene model=Glyma10g39950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCACTCAAAGAGCATCATTTTACCTTTGTCTCCTTGTTATTCTGATAACTCAAGCTACTGCGGAGCCAGACGACCAATACCCAGTCTGCCTCAGTCGTGGAGGAGACTATGCCCCTAATAGCACCTATCACACCAACCTCAATACTGTTCTTTCAAGGCTCACTTCCAACACGCAAATCGACTATGGCTTCTACAATTCCTCCTACGGCCAAGACTCTGATAGAGTCTACGCAACAGGCCTTTGCAGAGGAGATGTTTCCCGACATACTTGCCTTACTTGCCTCAACAATTCTAGCTTTTTTCTCCTAAAGAACTGTCCACATCAGAAGGAGGCTGTGGGATTTGGAGGATATGATAAATGCATTTTACACTATGCAGATCAGTCAATGTTCAGTTACCAAGATTCTTCTTTCCGGTTCTATTTTTGGGAGGAAACTAATGTAACGAATTGGGATCAGTACAGTTATGTGCTCAATCAGTTGCTGTCAAGACTAAGAGTGAAAGCTGCAACATCTAACTCCAATCTCAACCGTAAATTTGCTGCTGGAAATGCAACAGTTCCGACTCCGAGTTCCCAAACTATATATGCTGTTGTTCAGTGCTATCCTGATCTGACAGCCGCAGAATGCAACGACTGCTTAATTGGCGCTTTCTCAGAAATACCCAAAAATTGTAATAACAGGTCAGGTTGTGGAGTTACTATATTAAGCTGTAACTTTAGATATGAGAACTCCAGCTTCTATGAGCCTACGCCTGATACGATAACACTACAATTTTCACCACAAGGATCTCCATCTCCTACACCATCCATCACTTCAAATTCCTCAGAGAGTACTTATCATGGAAAAAGCAGCAAATCTCAAGCTGTCAACGCCAAATACGTTGTCGCACCTATTCTATTCTTTGTTGGGTTGCTGATCTTGATTTGCATCTATTTAAGAGTAAGGAAGCCAACAAAGCATTTTGAGAGTGAAACCATGGTTGATGACGAAATTAAACTAGTCGTGTCATCACAGTTTGACTTTGACACCATAAGAGTCGCTACGAACAACTTCTCTGATGCAAACAAGCTTGGACAAGGTGGATTTGGACCTGTTTACAGGGGACACTCTTCAATAAACAAGAAGTAG
>Glyma10g39950.2 sequence type=predicted peptide gene model=Glyma10g39950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVTQRASFYLCLLVILITQATAEPDDQYPVCLSRGGDYAPNSTYHTNLNTVLSRLTSNTQIDYGFYNSSYGQDSDRVYATGLCRGDVSRHTCLTCLNNSSFFLLKNCPHQKEAVGFGGYDKCILHYADQSMFSYQDSSFRFYFWEETNVTNWDQYSYVLNQLLSRLRVKAATSNSNLNRKFAAGNATVPTPSSQTIYAVVQCYPDLTAAECNDCLIGAFSEIPKNCNNRSGCGVTILSCNFRYENSSFYEPTPDTITLQFSPQGSPSPTPSITSNSSESTYHGETMVDDEIKLVVSSQFDFDTIRVATNNFSDANKLGQGGFGPVYSGYMAPEYARHGKLSTKLDVFSFGVVILEIVSGKKNSGFRIGESVEHLLSFAWKNWTKGTADKIIDPALNNALRDEILRCIHIGLLCVQEKVADRPTMASVILMLDSHSFALPVPLQPAYFMKNSCLSVIQFSGCSSVETGSNEQKSDSADVSANEASISSLYPR* >Glyma10g39950.3 sequence type=predicted peptide gene model=Glyma10g39950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVTQRASFYLCLLVILITQATAEPDDQYPVCLSRGGDYAPNSTYHTNLNTVLSRLTSNTQIDYGFYNSSYGQDSDRVYATGLCRGDVSRHTCLTCLNNSSFFLLKNCPHQKEAVGFGGYDKCILHYADQSMFSYQDSSFRFYFWEETNVTNWDQYSYVLNQLLSRLRVKAATSNSNLNRKFAAGNATVPTPSSQTIYAVVQCYPDLTAAECNDCLIGAFSEIPKNCNNRSGCGVTILSCNFRYENSSFYEPTPDTITLQFSPQGSPSPTPSITSNSSESTYHGKSSKSQAVNAKYVVAPILFFVGLLILICIYLRVRKPTKHFESETMVDDEIKLVVSSQFDFDTIRVATNNFSDANKLGQGGFGPVYRGHSSINKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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