Glyma10g39900 - SoyBase

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Report for Sequence Feature Glyma10g39900

Feature Type:	gene_model
Chromosome:	Gm10
Start:	47473119
stop:	47476734
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g39900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G05200	AT	Annotation by Michelle Graham. TAIR10: cysteine-rich RLK (RECEPTOR-like protein kinase) 25 \| chr4:2679793-2682309 REVERSE LENGTH=675	SoyBase	E_val: 0	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006826	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion transport	SoyBase	N/A	ISS
GO:0010106	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF430	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01657	PFAM	Domain of unknown function DUF26	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_G8A134	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G8A134_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LEA3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LEA3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g39900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g39900

Paralog	Evidence	Comments
Glyma20g27700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g39900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g253000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g39900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g39900

Limit To All Plant Sequences

>Glyma10g39900.1   sequence type=CDS   gene model=Glyma10g39900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGCATATTCGAATCCTCTTCAACCCACTTGCTACTTCTCTCTCTCTTTGCCTTGCTAAACTCTGCAAGTGAAGCAACTCCTATTTATACCGCACATGCCTGCACAGATGGATCCTATTACTTACCCAACACACCATTCCAAACCAACTTGAACCTCCTCCTCTCATCCCTCGTCTCCAGCGCCACCCTCCACGACGGATTCCACCGCACCACCATCGACGATGTCAAGGGACTCTTCCTCTGCCGCGGCGACGCCACCCCCTCCGCCTGTCACGACTGCGTCACCGCCGCGGCCAAAAATATCACAGACCTCTGCACCAACCAAACAGAGTCCATAATCTGGTACGACCACTGTATGCTGCGTTACTCCAACAGCTCCATTCTCAACAACATAGTTCCAAGTTTTGGCCTCGGTAACGAACCGAGCGTCCCTGACTCGGACCACACACGGTTCAACGATGTTCTTGCGCCCACGTTGAACGATGCGGCACGGGAAGCCGTGAATTCGAGTAAGAAGTTTGCTACAAAAGAAGCGAATTTCACGAGCTCCATGAAGCTCTACACACTGGCGCAGTGCACGCCCGATTTGTCCACTTCTGAGTGCAACACGTGCTTCGCAAGCTCCATCGGTGCCTTTCCGAATTGCTGTGACGGCAAACGAGGTGCACGGGTCCTGCTTCCGGGCTGTAGTGTCAGATATGAATTGTTTCCATTTTACAACGTTTCCACCGTTTCCCGCCTTCCCTCTCCGTCTTCAGGGAAAAGCAGTATCTCTATAATTTTGGCGATCGTTGTCCCAATTACAGTTGCAATTCTACTTTTCATTGTTGGCGTCTACTTCCTACGTAAGAGGGCAAGCAAGAAGTATAATACTTTCGTCCAGGATTCAATTGCAGATGATCTTACAGATGTCGGTGATGTGGAGTCCTTGCAATTCGACTTGCCTACAGTTGAAGCTGCCACAAACAGATTCTCGGATGAGAACAAGATTGGCCAAGGTGGATTTGGGGTGGTTTATAAGGGTGTCCTCCCTAGCGGACAGGAGATAGCTGTGAAGAGGTTGTCAGTAACCTCCTTGCAGGGTGCTGTAGAGTTCAGGAATGAAGCTGCTCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGACAAGAGAAGATCCTTATCTATGAATACATACCAAACAAAAGTCTTGATTACTTTTTATTTGACCCTGCAAAGCAAAAAGAGTTAGATTGGTCAAGACGCTACAAAATTATAGTTGGTATTGCTCGAGGAATTCAGTATTTACATGAAGATTCCCAACTTAGAATTATACACCGGGATGTCAAAGCTAGTAATGTTCTATTAGATGAAAATATGAACCCAAAGATTTCAGATTTTGGTATGGCAAAAATTTTCCAGGCAGATCAGACTCAAGTAAATACAGGAAGGATAGTTGGGACTTATGGTTACATGTCTCCAGAATATGCAATGCGTGGACAGTTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCTTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGACTTTTATCAATCGAATCATGCTGATGACCTTTTAAGCCATGCGTGGAAGAATTGGACACTGCAGACACCTCTGGAGTTGCTGGATCCAACACTGAGAGGTTCTTATTCAAGAAATGAAGTCAACAGATGCATCCATATTGGTTTATTGTGTGTTCAAGAAAATCCATCTGATAGGCCTTCGATGGCCACTATTGCACTTATGCTGAACAGTTATTCAGTTACCATGTCAATGCCACAACAACCAGCATCTTTTCTGCGTGGAAGAGGTCCTAACAGGTTAAACCAAGGGATGGACTCTGATCAGTCTACCACCGATCAGTCTACGACTTGTTCAATTCCATGGTCTGTGAATGAAGTATCCATTACTGATGTATACCCTCGCTAA

Predicted protein sequences of Glyma10g39900

Limit To All Plant Sequences

>Glyma10g39900.1   sequence type=predicted peptide   gene model=Glyma10g39900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCIFESSSTHLLLLSLFALLNSASEATPIYTAHACTDGSYYLPNTPFQTNLNLLLSSLVSSATLHDGFHRTTIDDVKGLFLCRGDATPSACHDCVTAAAKNITDLCTNQTESIIWYDHCMLRYSNSSILNNIVPSFGLGNEPSVPDSDHTRFNDVLAPTLNDAAREAVNSSKKFATKEANFTSSMKLYTLAQCTPDLSTSECNTCFASSIGAFPNCCDGKRGARVLLPGCSVRYELFPFYNVSTVSRLPSPSSGKSSISIILAIVVPITVAILLFIVGVYFLRKRASKKYNTFVQDSIADDLTDVGDVESLQFDLPTVEAATNRFSDENKIGQGGFGVVYKGVLPSGQEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDYFLFDPAKQKELDWSRRYKIIVGIARGIQYLHEDSQLRIIHRDVKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDFYQSNHADDLLSHAWKNWTLQTPLELLDPTLRGSYSRNEVNRCIHIGLLCVQENPSDRPSMATIALMLNSYSVTMSMPQQPASFLRGRGPNRLNQGMDSDQSTTDQSTTCSIPWSVNEVSITDVYPR*

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