SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G05230 | AT | Annotation by Michelle Graham. TAIR10: Ubiquitin-like superfamily protein | chr4:2687003-2687623 FORWARD LENGTH=206 | SoyBase | E_val: 3.00E-20 | ISS |
| GO:0006289 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide-excision repair | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG0005 | KOG | Ubiquitin-like protein | JGI | ISS | |
| PTHR10621 | Panther | UV EXCISION REPAIR PROTEIN RAD23 | JGI | ISS | |
| PTHR10621:SF0 | Panther | UV EXCISION REPAIR PROTEIN RAD23 | JGI | ISS | |
| PF00240 | PFAM | Ubiquitin family | JGI | ISS | |
| UniRef100_B9RXR6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin, putative n=1 Tax=Ricinus communis RepID=B9RXR6_RICCO | SoyBase | E_val: 7.00E-29 | ISS |
| UniRef100_I1LE93 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LE93_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g39800 not represented in the dataset |
Glyma10g39800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g252100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g39800.2 sequence type=CDS gene model=Glyma10g39800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATTAAGTTTCATGTCCAGCAGCAGGGAGGGAAAAATTTCAGTCTTGAAGTTGATCCCTCTGAAACAATCCGCCATGTCAAAGAGAAGGTGTTAAACTCTCAGCGCATTCCCATTTACCGCCAAATAATCATCTACCACGGCCAACTTCTCAGAGACGAATGGACCGTTTCGCAATGCGATCTCCATCATGGCGCTCGAATTCTCCTCCAACTTAGCGCCGAACGTCCTCCTTCGCCGCTGTCTCACTCAGACTTGCCCAAGCATCCGCAACCAACGCCCGACCTGCAACTGCCAACTCTTCCCACCAAAGAACACGTTCCCTCCGCCATCCCACCGTGGGATCCCTCGTTGCAGCTCATTCCTCCGCAAGACTTTTACGATCCGCTTGCGATGCCGGAGTGTCCTTCGTTATCGGACGTGATCCCGATGCCACAACCACCGTCCGAGCTAAAGGAGATCCAAGAGTTGCCGGCGTCAACGATACTATCGCGGCGGCTTCAGCTCTTTCGTCCGACGCCGTCGCAACTGGTTCCAAATCCGCTGCCGCCTCCTCCTCCGACGGTGACGCTGAACGTGAAAGTTCCAAGGTCGCAAGATCGCATCCCTATCGAAATGGAGAAGGTCGAAACCGTTCTGAATCTGAAATGGAAGATTTCTGAGCGCGGAGAGATGCGAGGTGTTCCGGTGGCGAGGATCGTGCTGCAGTCGCCTTCGATGGGCATGGAATTGCGAGACGATCAGATCCTGCAAAACATTATTGTTTCAGGGAGTCCTGAAATCGACGTGTTCTTGAAACCTTCTCTGCCGGTTCCCGGTAGGAGGATGAAGGTGAAGGTGATACCGAGGAATTCGAGACACACGGTGAAGATAGAGGTGAATTCCACGGACAAAGTTTCGGTGCTGAGGCAGGAGCTGGAGAGGTTGCAGCAGCTCGGTGGGTTTTCTCTTCCCGCGAATGGTGGTTATTTTTTCATTCACAAGCGGAATGCCATGGATGAAAATAATTCGTTTCTGTGGCACCGAGTTAGGGAGAGTGACACCATAGAAACCTTTGATGGATTAATTTCTTCTACTGCGGCATCGGCATCGGCATCTTCCTCGTCACGCCCTGCCTAA
>Glyma10g39800.2 sequence type=predicted peptide gene model=Glyma10g39800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEIKFHVQQQGGKNFSLEVDPSETIRHVKEKVLNSQRIPIYRQIIIYHGQLLRDEWTVSQCDLHHGARILLQLSAERPPSPLSHSDLPKHPQPTPDLQLPTLPTKEHVPSAIPPWDPSLQLIPPQDFYDPLAMPECPSLSDVIPMPQPPSELKEIQELPASTILSRRLQLFRPTPSQLVPNPLPPPPPTVTLNVKVPRSQDRIPIEMEKVETVLNLKWKISERGEMRGVPVARIVLQSPSMGMELRDDQILQNIIVSGSPEIDVFLKPSLPVPGRRMKVKVIPRNSRHTVKIEVNSTDKVSVLRQELERLQQLGGFSLPANGGYFFIHKRNAMDENNSFLWHRVRESDTIETFDGLISSTAASASASSSSRPA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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