SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04885 | AT | Annotation by Michelle Graham. TAIR10: PCF11P-similar protein 4 | chr4:2472083-2475417 FORWARD LENGTH=808 | SoyBase | E_val: 3.00E-105 | ISS |
| GO:0006378 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA polyadenylation | SoyBase | N/A | ISS |
| GO:0009911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR15921 | Panther | PRE-MRNA CLEAVAGE COMPLEX II | JGI | ISS | |
| UniRef100_Q0WPF2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PCF11P-similar protein 4 n=2 Tax=Arabidopsis thaliana RepID=Q0WPF2_ARATH | SoyBase | E_val: 2.00E-102 | ISS |
| UniRef100_UPI000233E1CA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E1CA related cluster n=1 Tax=unknown RepID=UPI000233E1CA | SoyBase | E_val: 0 | ISS |
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Glyma10g39715 not represented in the dataset |
Glyma10g39715 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g28035 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g39715.1 sequence type=CDS gene model=Glyma10g39715 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGAATATGCAGTTGCTAGCTGGTTATTTGAGAGAGACTATCCTCATCCGGCTGTTGATTTAGGAGTAGCCAAAGCATTAGGTAGACATGTGGAGGTTAGTGAACGGCAACGAAAACGAAAACAATTTCCAGCTTCTATCACACACAGCTTTATCAATGGACAGCAGCATCAAAGTCCAAGAGCTTTAATTGAGGCATATGGTAGTGACAAAAGCCAACAAACTTCAAGCAGCAAGTCTTTGTTAGTTGAACCACTGGATATAAATGGTATAGACAACATGTCAACTTCATTGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACCTTATTGTCTTCAACTATTGGTTTCTCCAGGGAAAGGCCTGTTGTTCCAGCTAATGCAACTTTGTCAGAGCAAGATGCCAGCAAGGGATGGGGTATTAGAGATTTTCGTCATGCACCATTGGGTGAGGTACCTAGATTCCAAAATCAAATCAATTATAGTCTAGGCTCTTCTCAACCTCATGATCCTTCGAAGATTTCTCTTCATCTGTCTAACTCATCACAACATAACTTTAATAATAGGGGGCGAGCAAGGAGTCTCACGATCCCTCCTGTTGATAACATTCGAAATACTGATATAAACCCATATCTGGTTCGACCTACATCTTTTGAAATAAGGCCTTCTACAAATTTGAATGTCACTCGACCTCCTACCTTAAATCCAATAACTCCATTGCAAAAACGTGTTAGGAATCAGTTTGAAGCTACACATACTAGTGACCCTATTGTGAACCATGTAAATAAATCTTCGTTTATGCCAGAACAGTCATTTGACCGTATTGAGAACAAGGATGCAAGTATTTCTAAGATACATCAGTTGCCTAATCAGCATCCCGGACTAATTTCATCCAACCAGCAAAATCACGGGCAAGCACCACAGCTGCAGTTTTTTCCATCTCAGGATCCAACGCCCTCTCAATTTAGTCCTGGGAGTTCATTGCAGCTACATGATGCTTCTATTAGTACAGCCATGTCAAATCCGTTACATGGTATACAATTCCCTTCACCAGTCCAAAGCTTTGCAAATAACCCTTTCATTAGATATACTAGTTTAATTAGTTCTCTAATGTCTCAAGGCGTGATCTCATTGGCTAACCAGCTGCCTGCACAGGATTCTATTGGAACTGAGTTTAATCCAGATATTCTGAAGGTTCGTCACGAGTCTCCAGCGAACGCCTTGTATCGTGATCTCCCTAGACAATGCAAAACTTGTGGGCTCCGATTCAGATGCCAAGAGAAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAGCTGTAAGCAGAAGCCCTCTCGCAAGTGGTTTGCGAGTCTTAAGCTGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCACATTTTTTGGCAACAGAAAGCATAGATTATGAAGAAAGGAAAGATCATGAAGAGTTTGCAGTGCCAACAGAAGAGGACCAGAGTACATGTGCGTTATGTGGAGAGTCTTTTGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGCATACCTCAATGCACCCGCTAGAAAAACATCAGCAGGCATGGATAGGTCACAGTTAGGCCCCATAATTCATGCTAAATGCAGATCAGACTCTAATCTGCAGTGTGCCAATGAAGAGGATACTCGAAGGAAACGAATGCGGAGTTGA
>Glyma10g39715.1 sequence type=predicted peptide gene model=Glyma10g39715 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEYAVASWLFERDYPHPAVDLGVAKALGRHVEVSERQRKRKQFPASITHSFINGQQHQSPRALIEAYGSDKSQQTSSSKSLLVEPLDINGIDNMSTSLQNTEEEEFDWEDMSPTLLSSTIGFSRERPVVPANATLSEQDASKGWGIRDFRHAPLGEVPRFQNQINYSLGSSQPHDPSKISLHLSNSSQHNFNNRGRARSLTIPPVDNIRNTDINPYLVRPTSFEIRPSTNLNVTRPPTLNPITPLQKRVRNQFEATHTSDPIVNHVNKSSFMPEQSFDRIENKDASISKIHQLPNQHPGLISSNQQNHGQAPQLQFFPSQDPTPSQFSPGSSLQLHDASISTAMSNPLHGIQFPSPVQSFANNPFIRYTSLISSLMSQGVISLANQLPAQDSIGTEFNPDILKVRHESPANALYRDLPRQCKTCGLRFRCQEKHSSHMDWHVTKNRMSKSCKQKPSRKWFASLKLWLSGAEALGTESVPHFLATESIDYEERKDHEEFAVPTEEDQSTCALCGESFDEFYSDEMEEWMYRGAAYLNAPARKTSAGMDRSQLGPIIHAKCRSDSNLQCANEEDTRRKRMRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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