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Report for Sequence Feature Glyma10g39681

Feature Type:gene_model
Chromosome:Gm10
Start:47312659
stop:47313471
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G05290AT Annotation by Michelle Graham. TAIR10: peroxisomal adenine nucleotide carrier 1 | chr3:1506129-1507614 REVERSE LENGTH=322 SoyBaseE_val: 3.00E-28ISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006839GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial transport SoyBaseN/AISS
GO:0007031GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome organization SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0015866GO-bp Annotation by Michelle Graham. GO Biological Process: ADP transport SoyBaseN/AISS
GO:0015867GO-bp Annotation by Michelle Graham. GO Biological Process: ATP transport SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080024GO-bp Annotation by Michelle Graham. GO Biological Process: indolebutyric acid metabolic process SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0090351GO-bp Annotation by Michelle Graham. GO Biological Process: seedling development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005743GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0005347GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP transmembrane transporter activity SoyBaseN/AISS
GO:0015217GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP transmembrane transporter activity SoyBaseN/AISS
PTHR24089Panther FAMILY NOT NAMED JGI ISS
PTHR24089:SF36Panther SUBFAMILY NOT NAMED JGI ISS
PF00153PFAM Mitochondrial carrier protein JGI ISS
UniRef100_A6YTC9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial FAD carrier n=1 Tax=Cucumis melo subsp. melo RepID=A6YTC9_CUCME SoyBaseE_val: 3.00E-30ISS
UniRef100_I1LE78UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LE78_SOYBN SoyBaseE_val: 2.00E-55ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g39681 not represented in the dataset

Glyma10g39681 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g28080 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g250900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g39681.1   sequence type=CDS   gene model=Glyma10g39681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCAGGCTGCTGAATCAGAAGATGATAAGAGTACAGAAGCTGAGAGGAAGGCGCAGAGGACCATCTCTGGAGCACTCTATACTATTTGGAAAAGAGAAGGTATATTGGGATTTTTCAAAGGATTGCAGGCACATATATTGAAAACTGTTCTCAGCTCTGCATTACTTCTGATGGTGAAGGAGAAGATTGCAAAGTCCACATGGATTCTAATCCTCGTGATTGGAAGATACCTGTCTGTGAATTCCCCCAAATTGAAGGCAGTTTGA

>Glyma10g39681.1   sequence type=predicted peptide   gene model=Glyma10g39681   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIQAAESEDDKSTEAERKAQRTISGALYTIWKREGILGFFKGLQAHILKTVLSSALLLMVKEKIAKSTWILILVIGRYLSVNSPKLKAV*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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