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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19300 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). | chr5:6495593-6497987 FORWARD LENGTH=398 | SoyBase | E_val: 3.00E-134 | ISS |
| GO:0000741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: karyogamy | SoyBase | N/A | ISS |
| GO:0006626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to mitochondrion | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009561 | GO-bp | Annotation by Michelle Graham. GO Biological Process: megagametogenesis | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3925 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR12150 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR12150:SF10 | Panther | gb def: conserved hypothetical protein [pyrobaculum aerophilum] | JGI | ISS | |
| PF02598 | PFAM | Uncharacterized ACR, COG2106 | JGI | ISS | |
| UniRef100_B6TIL9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Conserved protein n=1 Tax=Zea mays RepID=B6TIL9_MAIZE | SoyBase | E_val: 6.00E-126 | ISS |
| UniRef100_I1LE74 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LE74_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g39650 not represented in the dataset |
Glyma10g39650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g28110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g250600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g39650.3 sequence type=transcript gene model=Glyma10g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATATAAGCGAAGAAAAGGTCCAAAAACCCTCGAAAGTCTCTAACTCCATCGAAGGCAAGGAATGGCGAAGAAGAACAAGAAGCAGGCAACAGAGGGCGAGGTGGAACCGGAACTCAACACCAACAATGACGACAGCGATGATTCTCACAATAAGAAGAAACTTAAGAAAAAGAATAAGAAGATGAAAATACCCACAGTTAGCATAGCCGTGCCTGGTTCCATCATTGACAACGTTCCAACTCTCGAGCTCGCTACCCGGTTGGCTGGTCAAATCGCTCGTGCCGCAACCATTTTCCGAATCAACGAGGTGGTTGTGTTCGACAATAAAAGTAACCCAGATAATGATTCCGTGCTGGATAATTCGAATGATGAAAGTGGTGCCTCTTTTCTGATGCAAATCCTGCAGTATCTTGAGACACCTCAGTATTTGAGGAAGGCTCTTTTTCCAATGCATAACAGCCTACGATTTGTGGGCCTGTTGCCACCCCTTGATGCTCCACACCATTTGCGCAAACATGAATGGGGTCCTTATCGAGAAGGTGTCACTGTAAAAGAAAGACACTTGAACTCTGGGGCAACGCTAGTTGATGTTGGGTTAGTGAAGAATGTTATAGTTGACCAAATATTTAAACCAGGAAGAAGAGTTACTGTTGCCATGGGTACCGACCGAAATTTGGATTCTGATTTACCACGCCAGGTCGTCTCATCATCTAAGCCTACCAGGGAAGAAGGAACATAATTGGGGATATCAAGTGCGTTTATGCACATAATATAGTGC
>Glyma10g39650.1 sequence type=CDS gene model=Glyma10g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGAAGAACAAGAAGCAGGCAACAGAGGGCGAGGTGGAACCGGAACTCAACACCAACAATGACGACAGCGATGATTCTCACAATAAGAAGAAACTTAAGAAAAAGAATAAGAAGATGAAAATACCCACAGTTAGCATAGCCGTGCCTGGTTCCATCATTGACAACGTTCCAACTCTCGAGCTCGCTACCCGGTTGGCTGGTCAAATCGCTCGTGCCGCAACCATTTTCCGAATCAACGAGGTGGTTGTGTTCGACAATAAAAGTAACCCAGATAATGATTCCGTGCTGGATAATTCGAATGATGAAAGTGGTGCCTCTTTTCTGATGCAAATCCTGCAGTATCTTGAGACACCTCAGTATTTGAGGAAGGCTCTTTTTCCAATGCATAACAGCCTACGATTTGTGGGCCTGTTGCCACCCCTTGATGCTCCACACCATTTGCGCAAACATGAATGGGGTCCTTATCGAGAAGGTGTCACTGTAAAAGAAAGACACTTGAACTCTGGGGCAACGCTAGTTGATGTTGGGTTAGTGAAGAATGTTATAGTTGACCAAATATTTAAACCAGGAAGAAGAGTTACTGTTGCCATGGGTACCGACCGAAATTTGGATTCTGTGCCATACTTTTCTGATTGTGCAAACTTAACTGTTGTCCTGATTGTCATAATGTCATACCCTAGCTCCTGCAATGCATTGCCCTCTCATCGTGGCTATGATTTTATAATTGGTACCTCTGAGCATGGTCAGATTATTAAGTCTTCTGATCTTGAAATACCTTCTTTCAGACATTTATTGATTGCCTTTGGTGGACTGGCTGGGTTGGAAGAGAGTATTGAAGAAGATGATAACTTAAAGGGAAAAAAGGCACAGGATGCATTCAATTTATATTTAAATACATGTCCACATCAGGGCAGCCGAACAATTCGAACAGAGGAAGCTATTTTGATCTCTCTCCAGTACTTCCAAGAACCGATCAGCCGAGCATTGCAGTGTTGA >Glyma10g39650.3 sequence type=CDS gene model=Glyma10g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAAGAAGAACAAGAAGCAGGCAACAGAGGGCGAGGTGGAACCGGAACTCAACACCAACAATGACGACAGCGATGATTCTCACAATAAGAAGAAACTTAAGAAAAAGAATAAGAAGATGAAAATACCCACAGTTAGCATAGCCGTGCCTGGTTCCATCATTGACAACGTTCCAACTCTCGAGCTCGCTACCCGGTTGGCTGGTCAAATCGCTCGTGCCGCAACCATTTTCCGAATCAACGAGGTGGTTGTGTTCGACAATAAAAGTAACCCAGATAATGATTCCGTGCTGGATAATTCGAATGATGAAAGTGGTGCCTCTTTTCTGATGCAAATCCTGCAGTATCTTGAGACACCTCAGTATTTGAGGAAGGCTCTTTTTCCAATGCATAACAGCCTACGATTTGTGGGCCTGTTGCCACCCCTTGATGCTCCACACCATTTGCGCAAACATGAATGGGGTCCTTATCGAGAAGGTGTCACTGTAAAAGAAAGACACTTGAACTCTGGGGCAACGCTAGTTGATGTTGGGTTAGTGAAGAATGTTATAGTTGACCAAATATTTAAACCAGGAAGAAGAGTTACTGTTGCCATGGGTACCGACCGAAATTTGGATTCTGATTTACCACGCCAGGTCGTCTCATCATCTAAGCCTACCAGGGAAGAAGGAACATAA
>Glyma10g39650.1 sequence type=predicted peptide gene model=Glyma10g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKKNKKQATEGEVEPELNTNNDDSDDSHNKKKLKKKNKKMKIPTVSIAVPGSIIDNVPTLELATRLAGQIARAATIFRINEVVVFDNKSNPDNDSVLDNSNDESGASFLMQILQYLETPQYLRKALFPMHNSLRFVGLLPPLDAPHHLRKHEWGPYREGVTVKERHLNSGATLVDVGLVKNVIVDQIFKPGRRVTVAMGTDRNLDSVPYFSDCANLTVVLIVIMSYPSSCNALPSHRGYDFIIGTSEHGQIIKSSDLEIPSFRHLLIAFGGLAGLEESIEEDDNLKGKKAQDAFNLYLNTCPHQGSRTIRTEEAILISLQYFQEPISRALQC* >Glyma10g39650.3 sequence type=predicted peptide gene model=Glyma10g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKKNKKQATEGEVEPELNTNNDDSDDSHNKKKLKKKNKKMKIPTVSIAVPGSIIDNVPTLELATRLAGQIARAATIFRINEVVVFDNKSNPDNDSVLDNSNDESGASFLMQILQYLETPQYLRKALFPMHNSLRFVGLLPPLDAPHHLRKHEWGPYREGVTVKERHLNSGATLVDVGLVKNVIVDQIFKPGRRVTVAMGTDRNLDSDLPRQVVSSSKPTREEGT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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