SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G19320 | AT | Annotation by Michelle Graham. TAIR10: RAN GTPase activating protein 2 | chr5:6505310-6506947 REVERSE LENGTH=545 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006913 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0048527 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lateral root development | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG1909 | KOG | Ran GTPase-activating protein | JGI | ISS | |
| PTHR25480 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR25480:SF189 | Panther | JGI | ISS | ||
| UniRef100_G7IE29 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ran GTPase-activating protein n=1 Tax=Medicago truncatula RepID=G7IE29_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LE71 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LE71_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g39620 not represented in the dataset |
Glyma10g39620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g28130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g250400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g39620.3 sequence type=transcript gene model=Glyma10g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTAGCAGTAGGCGGTTGACCTAGCCCACACCATAAACACAAAAAATGAAAAAGCATTTAAAAGGGAGACATTTTTAGGGTTGTGGCTATAATGATCACCAATGGCATGCGGCATTCCACTTTCAAAAACAACACTTTTGTTGTTGTGCTAACAAATTTGATCCTTTTCACTGGCATCATTAATGTTTTCCCTCCTCACTCTTTCTCCTCTCTCTAAAATCACTATACTGTTGTACCATTCAAATTAAAGATTGTGCGAACTGCAGAGTAAACTGCAGTAGAGTTTTAACTAACCCTCAGATCAACGAAAAAAAGAGTTCTTGTTGGTTTCATTGCCATGGAGCTGAATTCACAGCCGAGACCATTTTCAATCAAATTATGGCCTCCTAGTCAGAACACTAGGCAGACCCTTGTGGAGAGGATGACCAACAATCTGACTACTAAATCGATTTTCACACAGAAGTATGGAACTTTGGACCAGGAAAAGGCTGAAGAGAATGCAAAGAGGATTGAGGATGTGGCTTTTGCTACAGCAAATCTACACTATGAGAAAGAGCCAGATGGTGATGGAGGTTCTGCAGTCCAGCTTTATGCCAAAGAATGTAGTAAGCTCCTCCTAGATGTTCTTAAAAGAGGACCTAGTAAAAAGGATGATGAAGAAGTGGTGGCATCTGTTAATACTACTGCACCTCATGAATCTGTTTTTGATATATCGAAAGGCCAAAGGGCCTTCATTGAAGCAGATGAGGCGCAGCAACTTTTAAGTCCATTAAAGGAGCCTGGAAATTCTTTCACCAAAATATGCTTTAGCAACAGGAGCTTTGGGTTAGGAGCAGCGCAAGTTGCCGAGCCCATTCTCACTGCCATCAAGGACCAGTTGAAGGAAGTAGATCTATCAGATTTTATTGCGGGAAGATCAGAAGTAGAAGCTCTTGATGTCATGAAGATATTCTCAACTGCCCTAGAAGGAAGCGTCTTGAGGTCTTTAAACCTTTCCGACAATGCATTAGGTGAAAAAGGTGTTAGAGCATTTGGAGCACTTTTGAAATCGCAGAAATGCTTGGAGGAGCTTTATCTGATGAATGATGGAATCTCAAAGGAAGCTGCTCGAGCAGTTTGCGAGTTGATTCCTTTCACAGAGAAACTCAAAGTTCTTCATTTTCATAATAATATGACTGGAGATGAAGGGGCACTAGCTATAGCCGAGGTTGTGAAGCGTTCTCCTTTGTTGGAAGATTTTCGCTGTTCCTCCACAAGGATAGGCGCTGAAGGTGGAGTTGCCTTGTCTGATGCTTTAGGGAGTTGTGCCCATCTGAAGAAGCTTGATTTGCGAGACAACATGTTAGGTGTGGACGGTGGGGTTTCTCTGAGTAAAGCTCTTAGCAAGCATGCAGAACTTAGAGAGGTATACCTGAGCTACCTGAACTTGGAAGACGATGGTGCAATTGCTATTGTTGATGCTCTTAAGGAATCAGCTCCTCACCTTGAAGTTTTGGAGATGAGCGGAAATGACAGTACAGCTGATGCTGCTCCTGCAATAGCAGCCTGCCTAGAAGCGAAGCAGTTTCTTTCCAAGTTGAACCTCTCTGAGAATGAACTCAAGGATGAAGGTGCCAAGCTGATAACTAAGGCCATAGAAGGCCATGTCCAATTAAAGGAAATTGATCTAAGTACCAACCAAATACGCAAGGATGGGGCTCAACAACTGGCTGTGACTGTGGTGCAAAAGGCTGATTTCAAACTTCTGAACATTAATGGGAACTTCATTTCTGATGAAGGCATTGATGAGTTGAAGGATATATTTAAAAAATCTCCAGACATGCTTGGTCCATTAGACGAAAATGACCCTGATGGAGTAGACGATGATGAAGAATCTGATGAAGAAGGTGGTGCAGATGAACTCGAATCCAAAATGAAGAACCTTGTAGTTGATGATTGAACTGAAGCAGTTGTAGTCTACTTTCATGTTCTGCTGCACAAGTAACTCTTATGACAGCAGTAGAAGGTTTTTAGACCATTTTATTCCTAGTAGTTTTATGTAACTGTTAAGACGCATCAATTTGACAGCAGTCAATTATTGAGGGGCATAAAATGTCTGCAATATTTATCGAAATGTTGTTTTCAATGTTTCCTTTCGAAGTTTCATTTTACTTGGCTAGATTATATACTATTTTCAGTTGCATCCCCGCCCGCAGCCATTAGTGTAATGACACCTTGCAATCGATGCTGTGTTATTTAGTTTTACATAAGATTCTGC
>Glyma10g39620.2 sequence type=CDS gene model=Glyma10g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTGAATTCACAGCCGAGACCATTTTCAATCAAATTATGGCCTCCTAGTCAGAACACTAGGCAGACCCTTGTGGAGAGGATGACCAACAATCTGACTACTAAATCGATTTTCACACAGAAGTATGGAACTTTGGACCAGGAAAAGGCTGAAGAGAATGCAAAGAGGATTGAGGATGTGGCTTTTGCTACAGCAAATCTACACTATGAGAAAGAGCCAGATGGTGATGGAGGTTCTGCAGTCCAGCTTTATGCCAAAGAATGTAGTAAGCTCCTCCTAGATGTTCTTAAAAGAGGACCTAGTAAAAAGGATGATGAAGAAGTGGTGGCATCTGTTAATACTACTGCACCTCATGAATCTGTTTTTGATATATCGAAAGGCCAAAGGGCCTTCATTGAAGCAGATGAGGCGCAGCAACTTTTAAGTCCATTAAAGGAGCCTGGAAATTCTTTCACCAAAATATGCTTTAGCAACAGGAGCTTTGGGTTAGGAGCAGCGCAAGTTGCCGAGCCCATTCTCACTGCCATCAAGGACCAGTTGAAGGAAGTAGATCTATCAGATTTTATTGCGGGAAGATCAGAAGTAGAAGCTCTTGATGTCATGAAGATATTCTCAACTGCCCTAGAAGGAAGCGTCTTGAGGTCTTTAAACCTTTCCGACAATGCATTAGGTGAAAAAGGTGTTAGAGCATTTGGAGCACTTTTGAAATCGCAGAAATGCTTGGAGGAGCTTTATCTGATGAATGATGGAATCTCAAAGGAAGCTGCTCGAGCAGTTTGCGAGTTGATTCCTTTCACAGAGAAACTCAAAGTTCTTCATTTTCATAATAATATGACTGGAGATGAAGGGGCACTAGCTATAGCCGAGGTTGTGAAGCGTTCTCCTTTGTTGGAAGATTTTCGCTGTTCCTCCACAAGGATAGGCGCTGAAGGTGGAGTTGCCTTGTCTGATGCTTTAGGGAGTTGTGCCCATCTGAAGAAGCTTGATTTGCGAGACAACATGTTAGGTGTGGACGGTGGGGTTTCTCTGAGTAAAGCTCTTAGCAAGCATGCAGAACTTAGAGAGGTATACCTGAGCTACCTGAACTTGGAAGACGATGGTGCAATTGCTATTGTTGATGCTCTTAAGGAATCAGCTCCTCACCTTGAAGTTTTGGAGATGAGCGGAAATGACAGTACAGCTGATGCTGCTCCTGCAATAGCAGCCTGCCTAGAAGCGAAGCAGTTTCTTTCCAAGTTGAACCTCTCTGAGAATGAACTCAAGGATGAAGGTGCCAAGCTGATAACTAAGGCCATAGAAGGCCATGTCCAATTAAAGGAAATTGATCTAAGTACCAACCAAATACGCAAGGATGGGGCTCAACAACTGGCTGTGACTGTGGTGCAAAAGGCTGATTTCAAACTTCTGAACATTAATGGGAACTTCATTTCTGATGAAGGCATTGATGAGTTGAAGGATATATTTAAAAAATCTCCAGACATGCTTGGTCCATTAGACGAAAATGACCCTGATGGAGTAGACGATGATGAAGAATCTGATGAAGAAGGTGGTGCAGATGAACTCGAATCCAAAATGAAGAACCTTGTAGTTGATGATTGA >Glyma10g39620.3 sequence type=CDS gene model=Glyma10g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGCTGAATTCACAGCCGAGACCATTTTCAATCAAATTATGGCCTCCTAGTCAGAACACTAGGCAGACCCTTGTGGAGAGGATGACCAACAATCTGACTACTAAATCGATTTTCACACAGAAGTATGGAACTTTGGACCAGGAAAAGGCTGAAGAGAATGCAAAGAGGATTGAGGATGTGGCTTTTGCTACAGCAAATCTACACTATGAGAAAGAGCCAGATGGTGATGGAGGTTCTGCAGTCCAGCTTTATGCCAAAGAATGTAGTAAGCTCCTCCTAGATGTTCTTAAAAGAGGACCTAGTAAAAAGGATGATGAAGAAGTGGTGGCATCTGTTAATACTACTGCACCTCATGAATCTGTTTTTGATATATCGAAAGGCCAAAGGGCCTTCATTGAAGCAGATGAGGCGCAGCAACTTTTAAGTCCATTAAAGGAGCCTGGAAATTCTTTCACCAAAATATGCTTTAGCAACAGGAGCTTTGGGTTAGGAGCAGCGCAAGTTGCCGAGCCCATTCTCACTGCCATCAAGGACCAGTTGAAGGAAGTAGATCTATCAGATTTTATTGCGGGAAGATCAGAAGTAGAAGCTCTTGATGTCATGAAGATATTCTCAACTGCCCTAGAAGGAAGCGTCTTGAGGTCTTTAAACCTTTCCGACAATGCATTAGGTGAAAAAGGTGTTAGAGCATTTGGAGCACTTTTGAAATCGCAGAAATGCTTGGAGGAGCTTTATCTGATGAATGATGGAATCTCAAAGGAAGCTGCTCGAGCAGTTTGCGAGTTGATTCCTTTCACAGAGAAACTCAAAGTTCTTCATTTTCATAATAATATGACTGGAGATGAAGGGGCACTAGCTATAGCCGAGGTTGTGAAGCGTTCTCCTTTGTTGGAAGATTTTCGCTGTTCCTCCACAAGGATAGGCGCTGAAGGTGGAGTTGCCTTGTCTGATGCTTTAGGGAGTTGTGCCCATCTGAAGAAGCTTGATTTGCGAGACAACATGTTAGGTGTGGACGGTGGGGTTTCTCTGAGTAAAGCTCTTAGCAAGCATGCAGAACTTAGAGAGGTATACCTGAGCTACCTGAACTTGGAAGACGATGGTGCAATTGCTATTGTTGATGCTCTTAAGGAATCAGCTCCTCACCTTGAAGTTTTGGAGATGAGCGGAAATGACAGTACAGCTGATGCTGCTCCTGCAATAGCAGCCTGCCTAGAAGCGAAGCAGTTTCTTTCCAAGTTGAACCTCTCTGAGAATGAACTCAAGGATGAAGGTGCCAAGCTGATAACTAAGGCCATAGAAGGCCATGTCCAATTAAAGGAAATTGATCTAAGTACCAACCAAATACGCAAGGATGGGGCTCAACAACTGGCTGTGACTGTGGTGCAAAAGGCTGATTTCAAACTTCTGAACATTAATGGGAACTTCATTTCTGATGAAGGCATTGATGAGTTGAAGGATATATTTAAAAAATCTCCAGACATGCTTGGTCCATTAGACGAAAATGACCCTGATGGAGTAGACGATGATGAAGAATCTGATGAAGAAGGTGGTGCAGATGAACTCGAATCCAAAATGAAGAACCTTGTAGTTGATGATTGA
>Glyma10g39620.2 sequence type=predicted peptide gene model=Glyma10g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELNSQPRPFSIKLWPPSQNTRQTLVERMTNNLTTKSIFTQKYGTLDQEKAEENAKRIEDVAFATANLHYEKEPDGDGGSAVQLYAKECSKLLLDVLKRGPSKKDDEEVVASVNTTAPHESVFDISKGQRAFIEADEAQQLLSPLKEPGNSFTKICFSNRSFGLGAAQVAEPILTAIKDQLKEVDLSDFIAGRSEVEALDVMKIFSTALEGSVLRSLNLSDNALGEKGVRAFGALLKSQKCLEELYLMNDGISKEAARAVCELIPFTEKLKVLHFHNNMTGDEGALAIAEVVKRSPLLEDFRCSSTRIGAEGGVALSDALGSCAHLKKLDLRDNMLGVDGGVSLSKALSKHAELREVYLSYLNLEDDGAIAIVDALKESAPHLEVLEMSGNDSTADAAPAIAACLEAKQFLSKLNLSENELKDEGAKLITKAIEGHVQLKEIDLSTNQIRKDGAQQLAVTVVQKADFKLLNINGNFISDEGIDELKDIFKKSPDMLGPLDENDPDGVDDDEESDEEGGADELESKMKNLVVDD* >Glyma10g39620.3 sequence type=predicted peptide gene model=Glyma10g39620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELNSQPRPFSIKLWPPSQNTRQTLVERMTNNLTTKSIFTQKYGTLDQEKAEENAKRIEDVAFATANLHYEKEPDGDGGSAVQLYAKECSKLLLDVLKRGPSKKDDEEVVASVNTTAPHESVFDISKGQRAFIEADEAQQLLSPLKEPGNSFTKICFSNRSFGLGAAQVAEPILTAIKDQLKEVDLSDFIAGRSEVEALDVMKIFSTALEGSVLRSLNLSDNALGEKGVRAFGALLKSQKCLEELYLMNDGISKEAARAVCELIPFTEKLKVLHFHNNMTGDEGALAIAEVVKRSPLLEDFRCSSTRIGAEGGVALSDALGSCAHLKKLDLRDNMLGVDGGVSLSKALSKHAELREVYLSYLNLEDDGAIAIVDALKESAPHLEVLEMSGNDSTADAAPAIAACLEAKQFLSKLNLSENELKDEGAKLITKAIEGHVQLKEIDLSTNQIRKDGAQQLAVTVVQKADFKLLNINGNFISDEGIDELKDIFKKSPDMLGPLDENDPDGVDDDEESDEEGGADELESKMKNLVVDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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